RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 LINC01555Q8NAE3 123 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 OR52L2PQ8NGH6 319 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 SLCO5A1Q9H2Y9 848 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 CHODLQ9H9P2 273 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 ZMAT3Q9HA38 289 aaKnown RBP8.35□□□□□ -1.07
CLIP1-214ENST00000540539 ZCCHC3Q9NUD5 404 aaKnown RBP8.35□□□□□ -1.07
CLIP1-214ENST00000540539 HCFC1R1Q9NWW0 138 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 UQCR10Q9UDW1 63 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 PRRC2BQ5JSZ5 2229 aaKnown RBP8.34□□□□□ -1.07
CLIP1-214ENST00000540539 E5RGE8 158 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 G3V3Y1 287 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 HYPMO75409 117 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 C8AP07357 584 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 PFN1P07737 140 aaKnown RBP8.34□□□□□ -1.07
CLIP1-214ENST00000540539 GLB1P16278 677 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 CTRLP40313 264 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 TAS2R30P59541 319 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 TGM3Q08188 693 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 FZD2Q14332 565 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 ACOT6Q3I5F7 207 aaPredicted RBP8.34□□□□□ -1.07
CLIP1-214ENST00000540539 OR4A47Q6IF82 309 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 LILRA6Q6PI73 481 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 THSD4Q6ZMP0 1018 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 TMEM182Q6ZP80 229 aaPredicted RBP8.34□□□□□ -1.07
CLIP1-214ENST00000540539 MDGA2Q7Z553 956 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 TMEM144Q7Z5S9 345 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 SERPINA9Q86WD7 417 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 TGIF2LYQ8IUE0 185 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 TCEAL8Q8IYN2 117 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 SCAMP5Q8TAC9 235 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 SNIP1Q8TAD8 396 aaKnown RBP8.34□□□□□ -1.07
CLIP1-214ENST00000540539 RHBDD1Q8TEB9 315 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 TMEM255BQ8WV15 326 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 C11orf40Q8WZ69 217 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 SGK2Q9HBY8 427 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 G6PC2Q9NQR9 355 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 BET1LQ9NYM9 111 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 KIAA1456Q9P272 454 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 WIPI2Q9Y4P8 454 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 COL4A4P53420 1690 aaPredicted RBP8.34□□□□□ -1.07
CLIP1-214ENST00000540539 MYO16Q9Y6X6 1858 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 IMPA1P29218 277 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 SERPINA4P29622 427 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 CNN1P51911 297 aaKnown RBP8.34□□□□□ -1.07
CLIP1-214ENST00000540539 TAS2R50P59544 299 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 FUT5Q11128 374 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 ZNF627Q7L945 461 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 COMMD6Q7Z4G1 85 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 OR2L13Q8N349 312 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 IL22RA1Q8N6P7 574 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 SLC2A12Q8TD20 617 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 RPS4Y2Q8TD47 263 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 ZMYND19Q96E35 227 aaPredicted RBP8.34□□□□□ -1.07
CLIP1-214ENST00000540539 RASL10BQ96S79 203 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 ATP6V0BQ99437 205 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 ZNF576Q9H609 170 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 SIRT3Q9NTG7 399 aaPredicted RBP8.34□□□□□ -1.07
CLIP1-214ENST00000540539 FLRT3Q9NZU0 649 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 REV3LO60673 3130 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 DOCK6Q96HP0 2047 aa8.34□□□□□ -1.07
CLIP1-214ENST00000540539 A0A1W2PNV4 684 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 ODAMA1E959 279 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 B4DGG1 531 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 MPZL1O95297 269 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 IGLC2P0DOY2 106 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 IGLC3P0DOY3 106 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 RHOQP17081 205 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 RGRP47804 291 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 FAM3BP58499 235 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-214ENST00000540539 PFN3P60673 137 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 CDK3Q00526 305 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 TLE3Q04726 772 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 PNRC1Q12796 327 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-214ENST00000540539 NSDHLQ15738 373 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 ZNF506Q5JVG8 444 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 FAM71E1Q6IPT2 247 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 ZNF584Q8IVC4 421 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 PLPP7Q8NBV4 271 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 OR4B1Q8NGF8 309 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 OR52L1Q8NGH7 329 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 ADAMTS15Q8TE58 950 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 SARAFQ96BY9 339 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 DCBLD2Q96PD2 775 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 IMMP2LQ96T52 175 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 TAAR2Q9P1P5 351 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 ZNF107Q9UII5 783 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-214ENST00000540539 INSL5Q9Y5Q6 135 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 GAGE12BA1L429 117 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 GJE1A6NN92 205 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 SAP18O00422 153 aaKnown RBP8.33□□□□□ -1.08
CLIP1-214ENST00000540539 OR7C2O60412 319 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 SCGB1D2O95969 90 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 CT45A8P0DMV1 189 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 CT45A9P0DMV2 189 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 P2RY1P47900 373 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 BLKP51451 505 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 UBE2NP61088 152 aaKnown RBP8.33□□□□□ -1.08
CLIP1-214ENST00000540539 SNRPD1P62314 119 aaKnown RBP8.33□□□□□ -1.08
CLIP1-214ENST00000540539 DECR1Q16698 335 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 ANKRD55Q3KP44 614 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms