RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 RAB27BO00194 218 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 AKR7A2O43488 359 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 IGHV3-13P01766 116 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 GSTP1P09211 210 aaKnown RBP10.97□□□□□ -0.65
VPS13D-205ENST00000473099 SERPINA2P20848 420 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 CA6P23280 308 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 PRSS3P35030 304 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 MPV17P39210 176 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 GPM6AP51674 278 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 KLF3P57682 345 aaPredicted RBP10.97□□□□□ -0.65
VPS13D-205ENST00000473099 ERVS71-1P61550 626 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 PLA2G7Q13093 441 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 MADCAM1Q13477 382 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 OR8G1Q15617 311 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 ZNF57Q68EA5 555 aaPredicted RBP10.97□□□□□ -0.65
VPS13D-205ENST00000473099 OR10K2Q6IF99 312 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 ALKBH2Q6NS38 261 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 DNM1P46Q6ZS02 220 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 RNF144BQ7Z419 303 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 IZUMO1Q8IYV9 350 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 FAM89BQ8N5H3 189 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 OR10R2Q8NGX6 335 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 OR13G1Q8NGZ3 307 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 OR51F2Q8NH61 342 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 YIPF5Q969M3 257 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 TRIM63Q969Q1 353 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 RADILQ96JH8 1075 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 ZNF442Q9H7R0 627 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 AUNIPQ9H7T9 357 aa10.97□□□□□ -0.65
VPS13D-205ENST00000473099 SPTBN1Q01082 2364 aaKnown RBP10.97□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A10PA6NDY2 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A18PA6NE21 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A16PA6NEW6 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A20PA6NIJ5 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A8PA6NJQ4 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A7PA6NKC0 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A22PA8MWA6 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A12PA8MX19 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A5PA8MXJ8 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A23PA8MXZ1 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 TPD52L2O43399 206 aaKnown RBP10.96□□□□□ -0.65
VPS13D-205ENST00000473099 HTR3BO95264 441 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 THBDP07204 575 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A15PP0C7V4 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A13PP0C7W8 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A14PP0C7W9 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM90A24PP0C7X0 464 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 MPZP25189 248 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 HAAOP46952 286 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 VEGFCP49767 419 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FABP6P51161 128 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 ACTBP60709 375 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 ACTG1P63261 375 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 DGCR2P98153 550 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 IL24Q13007 206 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 DYRK1AQ13627 763 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 OXA1LQ15070 435 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 PNLIPRP3Q17RR3 467 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 FAM76BQ5HYJ3 339 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 DMRTC1Q5HYR2 192 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 ELP2Q6IA86 826 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 C1QL2Q7Z5L3 287 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 Q8IYB0 196 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 CENPSQ8N2Z9 138 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 TOMM5Q8N4H5 51 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 DTX3Q8N9I9 347 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 ACBD4Q8NC06 268 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 TMEM104Q8NE00 496 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 Q8NFD4 153 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 OR51T1Q8NGJ9 327 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 COX4I2Q96KJ9 171 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 Q96M66 194 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 WFIKKN1Q96NZ8 548 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 CXXC4Q9H2H0 198 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 PLK3Q9H4B4 646 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.96□□□□□ -0.65
VPS13D-205ENST00000473099 MYEF2Q9P2K5 600 aaKnown RBP10.96□□□□□ -0.65
VPS13D-205ENST00000473099 ZNF107Q9UII5 783 aaPredicted RBP10.96□□□□□ -0.65
VPS13D-205ENST00000473099 POLDIP2Q9Y2S7 368 aa10.96□□□□□ -0.65
VPS13D-205ENST00000473099 RBMX2Q9Y388 322 aaKnown RBP10.96□□□□□ -0.65
VPS13D-205ENST00000473099 IGLV3-9A0A075B6K5 115 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 ATP6V1G2-DDX39BF2Z307 99 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 TRAPPC2LH3BP13 241 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 H7C417 338 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 J3QT63 122 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 SPRY1O43609 319 aaPredicted RBP10.95□□□□□ -0.66
VPS13D-205ENST00000473099 CA11O75493 328 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 RBBP9O75884 186 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 LPLP06858 475 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 MELTFP08582 738 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 GDNFP39905 211 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 NHLRC3Q5JS37 347 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 DCDC5Q6ZRR9 648 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 SLC25A26Q70HW3 274 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 LINC00596Q86U02 117 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 BIVMQ86UB2 503 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 CALHM1Q8IU99 346 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 OSR2Q8N2R0 312 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 CHST4Q8NCG5 386 aa10.95□□□□□ -0.66
VPS13D-205ENST00000473099 OR52I2Q8NH67 350 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms