RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SHANK1Q9Y566 2161 aa9□□□□□ -0.97
LIMA1-201ENST00000341247 M0R296 226 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 B3GALNT1O75752 331 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 IL2RAP01589 272 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 CNR1P21554 472 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 AGTR1P30556 359 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 S100A10P60903 97 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 FGL1Q08830 312 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 TMEM164Q5U3C3 297 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 AADACL3Q5VUY0 350 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 JMJD6Q6NYC1 403 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-201ENST00000341247 C5orf24Q7Z6I8 188 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 PDZD9Q8IXQ8 264 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 INO80EQ8NBZ0 244 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-201ENST00000341247 CPEB3Q8NE35 698 aaKnown RBP8.99□□□□□ -0.97
LIMA1-201ENST00000341247 OR2M7Q8NG81 312 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 CPT1CQ8TCG5 803 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 RTBDNQ9BSG5 229 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-201ENST00000341247 ZNF629Q9UEG4 869 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-201ENST00000341247 BOKQ9UMX3 212 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-201ENST00000341247 AUP1Q9Y679 476 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 NUPL2O15504 423 aaKnown RBP8.99□□□□□ -0.97
LIMA1-201ENST00000341247 CD8AP01732 235 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 APOC1P02654 83 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 ARF1P84077 181 aaKnown RBP8.99□□□□□ -0.97
LIMA1-201ENST00000341247 TGIF1Q15583 401 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 SIGIRRQ6IA17 410 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 TMEM200AQ86VY9 491 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 FBXL14Q8N1E6 418 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 FAM89BQ8N5H3 189 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 IL22RA1Q8N6P7 574 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 OR6K3Q8NGY3 331 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 ANGPTL6Q8NI99 470 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 NTNG2Q96CW9 530 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 OCSTAMPQ9BR26 566 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 METTL9Q9H1A3 318 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 KIF25Q9UIL4 384 aa8.99□□□□□ -0.97
LIMA1-201ENST00000341247 A0A0B4J2A0 478 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 IGKV1-12A0A0C4DH73 117 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 ZNF850A8MQ14 1090 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 HSPB6O14558 160 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 IGKV1D-12P01611 117 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 CST2P09228 141 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 CD79AP11912 226 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 ZNF133P52736 654 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-201ENST00000341247 SUPT4H1P63272 117 aaKnown RBP8.98□□□□□ -0.97
LIMA1-201ENST00000341247 PNLIPRP3Q17RR3 467 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 OR1S1Q8NH92 325 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 REG4Q9BYZ8 158 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 C12orf49Q9H741 205 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 MYOZ1Q9NP98 299 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-201ENST00000341247 SHPKQ9UHJ6 478 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 AK3Q9UIJ7 227 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 GPR160Q9UJ42 338 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 TNFSF15O95150 251 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 CD59P13987 128 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 RBP2P50120 134 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 GFRA1P56159 465 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 TUSC1Q2TAM9 212 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 VAX1Q5SQQ9 334 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 ARRDC1Q8N5I2 433 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 ZSCAN4Q8NAM6 433 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-201ENST00000341247 GALNT11Q8NCW6 608 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 OR5AP2Q8NGF4 316 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 OR51F2Q8NH61 342 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 OR10C1Q96KK4 312 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 CMSS1Q9BQ75 279 aaKnown RBP8.98□□□□□ -0.97
LIMA1-201ENST00000341247 SULT4A1Q9BR01 284 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 OR2S2Q9NQN1 319 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 KCNMB2Q9Y691 235 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 MSTNO14793 375 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 FARS2O95363 451 aaKnown RBP8.98□□□□□ -0.97
LIMA1-201ENST00000341247 CRHP06850 196 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 TBPP20226 339 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 PSMB6P28072 239 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 FAM3AP98173 230 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 IGFBP7Q16270 282 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 SP6Q3SY56 376 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 DCAF10Q5QP82 559 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 ABLIM2Q6H8Q1 611 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 STPG2Q8N412 459 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 OR5M9Q8NGP3 310 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 CPNE4Q96A23 557 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-201ENST00000341247 WBP1Q96G27 269 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 NARS2Q96I59 477 aaKnown RBP8.98□□□□□ -0.97
LIMA1-201ENST00000341247 CRIM1Q9NZV1 1036 aa8.98□□□□□ -0.97
LIMA1-201ENST00000341247 TEX13DA0A0J9YY54 714 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-201ENST00000341247 C5orf49A4QMS7 147 aa8.97□□□□□ -0.97
LIMA1-201ENST00000341247 H0YIZ8 118 aa8.97□□□□□ -0.97
LIMA1-201ENST00000341247 CDX4O14627 284 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-201ENST00000341247 SFT2D2O95562 160 aa8.97□□□□□ -0.97
LIMA1-201ENST00000341247 MT-CO3P00414 261 aa8.97□□□□□ -0.97
LIMA1-201ENST00000341247 EDN3P14138 238 aa8.97□□□□□ -0.97
LIMA1-201ENST00000341247 AKR1C2P52895 323 aa8.97□□□□□ -0.97
LIMA1-201ENST00000341247 AKR1C1Q04828 323 aa8.97□□□□□ -0.97
LIMA1-201ENST00000341247 LPCAT3Q6P1A2 487 aa8.97□□□□□ -0.97
LIMA1-201ENST00000341247 SLC38A6Q8IZM9 456 aa8.97□□□□□ -0.97
LIMA1-201ENST00000341247 EMG1Q92979 244 aaKnown RBP8.97□□□□□ -0.97
LIMA1-201ENST00000341247 RRNAD1Q96FB5 475 aaKnown RBP8.97□□□□□ -0.97
LIMA1-201ENST00000341247 Q96M66 194 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms