RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CCDC120Q96HB5 630 aa13.26□□□□□ -0.29
LIMS1-202ENST00000338045 USB1Q9BQ65 265 aaKnown RBP13.26□□□□□ -0.29
LIMS1-202ENST00000338045 MARVELD1Q9BSK0 173 aa13.26□□□□□ -0.29
LIMS1-202ENST00000338045 BCL2L14Q9BZR8 327 aa13.26□□□□□ -0.29
LIMS1-202ENST00000338045 SELENOIQ9C0D9 397 aa13.26□□□□□ -0.29
LIMS1-202ENST00000338045 ACTR6Q9GZN1 396 aa13.26□□□□□ -0.29
LIMS1-202ENST00000338045 HRASLSQ9HDD0 168 aa13.26□□□□□ -0.29
LIMS1-202ENST00000338045 ELF5Q9UKW6 265 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-202ENST00000338045 PRR14LQ5THK1 2151 aa13.26□□□□□ -0.29
LIMS1-202ENST00000338045 NAP1L6A6NFF2 107 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 IQCF6A8MYZ5 107 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 GSTP1P09211 210 aaKnown RBP13.25□□□□□ -0.29
LIMS1-202ENST00000338045 CPT2P23786 658 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 CALCRP30988 508 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 CCKARP32238 428 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 ACTBP60709 375 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 ACTG1P63261 375 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 NAAAQ02083 359 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 PLAC9Q5JTB6 97 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 TMEM211Q6ICI0 200 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 CALHM1Q8IU99 346 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 CHST4Q8NCG5 386 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 RND1Q92730 232 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 UPRTQ96BW1 309 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 MUCL1Q96DR8 90 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 RNF170Q96K19 258 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 Q96M66 194 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 ELL3Q9HB65 397 aaPredicted RBP13.25□□□□□ -0.29
LIMS1-202ENST00000338045 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.25□□□□□ -0.29
LIMS1-202ENST00000338045 SPTA1P02549 2419 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 CSF1P09603 554 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 GTF2F2P13984 249 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 HIST1H1DP16402 221 aaKnown RBP13.25□□□□□ -0.29
LIMS1-202ENST00000338045 GNB3P16520 340 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 SELEP16581 610 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 PSG7Q13046 419 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 PPA1Q15181 289 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 RSU1Q15404 277 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 PCGF3Q3KNV8 242 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 TMEM255AQ5JRV8 349 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 SAXO1Q8IYX7 474 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 ZNF611Q8N823 705 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 Q8NFD4 153 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 OR51T1Q8NGJ9 327 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 KLF14Q8TD94 323 aaPredicted RBP13.25□□□□□ -0.29
LIMS1-202ENST00000338045 RAB3CQ96E17 227 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 MRPS24Q96EL2 167 aaKnown RBP13.25□□□□□ -0.29
LIMS1-202ENST00000338045 DPAGT1Q9H3H5 408 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 NPAP1Q9NZP6 1156 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 ZNF107Q9UII5 783 aaPredicted RBP13.25□□□□□ -0.29
LIMS1-202ENST00000338045 KCNK7Q9Y2U2 307 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 MEMO1Q9Y316 297 aa13.25□□□□□ -0.29
LIMS1-202ENST00000338045 OR5B21A6NL26 309 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 ZNF732B4DXR9 585 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 MFNGO00587 321 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 PLATP00750 562 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 MT-ND4P03905 459 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 CSTBP04080 98 aaKnown RBP13.24□□□□□ -0.29
LIMS1-202ENST00000338045 CA7P43166 264 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 GPM6AP51674 278 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 SEZ6L2Q6UXD5 910 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 CREB3L1Q96BA8 519 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 HIST1H2AAQ96QV6 131 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 OR10A4Q9H209 315 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 COPZ2Q9P299 210 aa13.24□□□□□ -0.29
LIMS1-202ENST00000338045 SHANK1Q9Y566 2161 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 HTR3BO95264 441 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 GIFP27352 417 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 ZNF83P51522 516 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 CASP6P55212 293 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 GNG3P63215 75 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 RTN4RL2Q86UN3 420 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 TMEM200AQ86VY9 491 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 OR51F2Q8NH61 342 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 DVL3Q92997 716 aaPredicted RBP13.23□□□□□ -0.29
LIMS1-202ENST00000338045 NEURL2Q9BR09 285 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 AIFM2Q9BRQ8 373 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 CACNG6Q9BXT2 260 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 PCDHB16Q9NRJ7 776 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 POLEQ07864 2286 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 TRGV8A0A0C4DH27 118 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 MEIS3P1A6NDR6 274 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 C16orf97H3BN30 126 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 AKR7A2O43488 359 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 TCRBP04435 133 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 SFTPBP07988 381 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 CA6P23280 308 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 MPV17P39210 176 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 HAAOP46952 286 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 PNLIPRP3Q17RR3 467 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 ALKBH6Q3KRA9 238 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 MBNL2Q5VZF2 373 aaKnown RBP13.23□□□□□ -0.29
LIMS1-202ENST00000338045 SLC25A26Q70HW3 274 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 FJX1Q86VR8 437 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 TMEM229BQ8NBD8 167 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 CHAC2Q8WUX2 184 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 POM121Q96HA1 1249 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 ARHGAP5-AS1Q96IT6 56 aa13.23□□□□□ -0.29
LIMS1-202ENST00000338045 NOP16Q9Y3C1 178 aaKnown RBP13.23□□□□□ -0.29
LIMS1-202ENST00000338045 A0A0B4J293 547 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms