RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 HSP90B2PQ58FF3 399 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 CEP78Q5JTW2 689 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 PLCXD3Q63HM9 321 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 DEGS2Q6QHC5 323 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 LHFPL4Q7Z7J7 247 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 ZNF573Q86YE8 665 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 CD177Q8N6Q3 437 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 MAGIXQ9H6Y5 334 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 REEP1Q9H902 201 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 ACTR3BQ9P1U1 418 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 SAMHD1Q9Y3Z3 626 aaKnown RBP11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 C17orf98A8MV24 154 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 ODF3BA8MYP8 253 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 H3BN98 237 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 J3QT63 122 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 F2RL2O00254 374 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 NOS1APO75052 506 aaPredicted RBP11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 NXPH2O95156 264 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 DUS4LO95620 317 aaKnown RBP11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 ARG1P05089 322 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 PGA5P0DJD9 388 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 PF4V1P10720 104 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 OR12D2P58182 307 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 PPP1R8Q12972 351 aaKnown RBP11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 SLC35D3Q5M8T2 416 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 ZNF684Q5T5D7 378 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 ZNF626Q68DY1 528 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 OR2T5Q6IEZ7 315 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 LCN8Q6JVE9 175 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 KCTD18Q6PI47 426 aaPredicted RBP11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 C16orf89Q6UX73 402 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 CCBE1Q6UXH8 406 aaPredicted RBP11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 ZNF782Q6ZMW2 699 aaPredicted RBP11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 MOB3CQ70IA8 216 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 KRT77Q7Z794 578 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 COMMD2Q86X83 199 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 TMEM219Q86XT9 240 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 OR11H6Q8NGC7 330 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 OR4M1Q8NGD0 313 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 OR2T29Q8NH02 315 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 RCC1LQ96I51 464 aaKnown RBP11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 MED4Q9NPJ6 270 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 ENPP5Q9UJA9 477 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 LAMP5Q9UJQ1 280 aa11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.91□□□□□ -0.5
CCDC88B-201ENST00000301897 SELENOFO60613 162 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 NRASP01111 189 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 PF4P02776 101 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 TK1P04183 234 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 ZNF728P0DKX0 622 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 CCL3L1P16619 93 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 RAB13P51153 203 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 CD83Q01151 205 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 ZNF273Q14593 569 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 SSX2Q16385 188 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 PLA1AQ53H76 456 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 MINOS1Q5TGZ0 78 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 TRPM8Q7Z2W7 1104 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 OCSTAMPQ9BR26 566 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 TAGLN3Q9UI15 199 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 PIGLQ9Y2B2 252 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 MINOS1-NBL1R4GNA1 71 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 U3KQV3 271 aa11.9□□□□□ -0.5
CCDC88B-201ENST00000301897 DSCAML1Q8TD84 2053 aa11.9□□□□□ -0.51
CCDC88B-201ENST00000301897 TMEM269A0A1B0GVZ9 245 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 SNX3O60493 162 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 ZNF254O75437 659 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 CLIC3O95833 236 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 HMGN1P05114 100 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 IGLL1P15814 213 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 ALOX5APP20292 161 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 HAAOP46952 286 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 DLX6P56179 175 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 ZNF829Q3KNS6 432 aaPredicted RBP11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 PLBD1Q6P4A8 553 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 CYP2R1Q6VVX0 501 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 C16orf82Q7Z2V1 217 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 DEFB107AQ8IZN7 70 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 DYNAPQ8N1N2 210 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 IQCF1Q8N6M8 205 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 OR5AU1Q8NGC0 362 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 OR10G2Q8NGC3 310 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 AKR1E2Q96JD6 320 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 OR5M11Q96RB7 305 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 OR8B4Q96RC9 309 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 NRIP2Q9BQI9 281 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 MROQ9BYG7 248 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 GPR61Q9BZJ8 451 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 YIPF3Q9GZM5 350 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 MUC13Q9H3R2 512 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 FAM206AQ9NX38 181 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 VNN3Q9NY84 501 aa11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 TSSC4Q9Y5U2 329 aaPredicted RBP11.89□□□□□ -0.51
CCDC88B-201ENST00000301897 A0A1W2PRX2 142 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 TCRBV5S2A0A599 114 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 ARRDC5A6NEK1 342 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 K7EIL1 84 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 K7N7A8 449 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 DHRS3O75911 302 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 ATP6V1B2P21281 511 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms