RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TBR1Q16650 682 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 Q6ZS92 163 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 OR5A2Q8NGI9 324 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 OR2J1Q9GZK6 312 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 KCNK15Q9H427 330 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 V9GYH0 126 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 ZNHIT1O43257 154 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 SNAPC5O75971 98 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 DUSP1P28562 367 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 EDDM3BP56851 147 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 EIF5AP63241 154 aaKnown RBP10.09□□□□□ -0.79
VPS4A-201ENST00000254950 CYCSP99999 105 aaKnown RBP10.09□□□□□ -0.79
VPS4A-201ENST00000254950 HLXQ14774 488 aaPredicted RBP10.09□□□□□ -0.79
VPS4A-201ENST00000254950 ALKBH6Q3KRA9 238 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 VWA1Q6PCB0 445 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 C1orf174Q8IYL3 243 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 C9orf106Q8NAJ2 232 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 DEDD2Q8WXF8 326 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 ITPKCQ96DU7 683 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 RRNAD1Q96FB5 475 aaKnown RBP10.09□□□□□ -0.79
VPS4A-201ENST00000254950 ELMOD3Q96FG2 381 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 ARHGAP5-AS1Q96IT6 56 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 C12orf4Q9NQ89 552 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 GNG12Q9UBI6 72 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 MGAT4AQ9UM21 535 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 EDARQ9UNE0 448 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 FAM221AA4D161 298 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 DHRS7CA6NNS2 312 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 GOSR2O14653 212 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 SERPINE2P07093 398 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 CTXN2P0C2S0 81 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 TNFRSF1AP19438 455 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 ERP29P30040 261 aaKnown RBP10.09□□□□□ -0.79
VPS4A-201ENST00000254950 ECI1P42126 302 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 AKR1C2P52895 323 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 SNAI3Q3KNW1 292 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 LPCAT3Q6P1A2 487 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 FAM58AQ8N1B3 248 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 C17orf78Q8N4C9 275 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 PRR7Q8TB68 274 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 RAB39BQ96DA2 213 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 LRP4O75096 1905 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 PROB1E7EW31 1015 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 E9PQ18 207 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 CNOT4O95628 575 aaKnown RBP10.08□□□□□ -0.8
VPS4A-201ENST00000254950 ZNF728P0DKX0 622 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 FGL1Q08830 312 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 ZMYND11Q15326 602 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 LRRTM1Q86UE6 522 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 DEFB108BQ8NET1 73 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 RGP1Q92546 391 aaPredicted RBP10.08□□□□□ -0.8
VPS4A-201ENST00000254950 FOXD3Q9UJU5 478 aaPredicted RBP10.08□□□□□ -0.8
VPS4A-201ENST00000254950 COL4A2P08572 1712 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 KANTRA0A1W2PQU2 76 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 LMX1BO60663 402 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 KIR2DL3P43628 341 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 TMEM229BQ8NBD8 167 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 OR4C16Q8NGL9 310 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 RNF138Q8WVD3 245 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 SECTM1Q8WVN6 248 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 ADGRG7Q96K78 797 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 HYLS1Q96M11 299 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 CHST6Q9GZX3 395 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 CXXC4Q9H2H0 198 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 PPIL3Q9H2H8 161 aaKnown RBP10.08□□□□□ -0.8
VPS4A-201ENST00000254950 SESN1Q9Y6P5 492 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 PRR32B1ATL7 298 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 PDCD6O75340 191 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 WISP1O95388 367 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 ALDOBP05062 364 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 GLAP06280 429 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 CD3EP07766 207 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 VSIG8P0DPA2 414 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 NPY4RP50391 375 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 UCP2P55851 309 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 RRAS2P62070 204 aaPredicted RBP10.08□□□□□ -0.8
VPS4A-201ENST00000254950 ZBTB37Q5TC79 503 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 FAAP20Q6NZ36 180 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 ZNF485Q8NCK3 441 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 FN3KRPQ9HA64 309 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 CACNA1BQ00975 2339 aa10.08□□□□□ -0.8
VPS4A-201ENST00000254950 OR5H1A6NKK0 313 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 F5H5P2 479 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 SS18L1O75177 396 aaPredicted RBP10.07□□□□□ -0.8
VPS4A-201ENST00000254950 ATG12O94817 140 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 DKK1O94907 266 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 RFX2P48378 723 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 MAFIPQ8WZ33 124 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 KIRREL1Q96J84 757 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 SPIN2AQ99865 258 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 SPIN2BQ9BPZ2 258 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 ASF1BQ9NVP2 202 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 TINAGQ9UJW2 476 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 CTDSPLO15194 276 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 SPINT2O43291 252 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 SYNGR3O43761 229 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 ADRA2CP18825 462 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 HRH1P35367 487 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 ZNF81P51508 661 aa10.07□□□□□ -0.8
VPS4A-201ENST00000254950 C1orf100Q5SVJ3 147 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms