RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ESPNLQ6ZVH7 1005 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 NDUFS6O75380 124 aaKnown RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 OR7C1O76099 320 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 IL3RAP26951 378 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SLC37A1P57057 533 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 MEF2BQ02080 365 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 LIAT1Q6ZQX7 453 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 ADTRPQ96IZ2 230 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 TRBV11-1A0A0K0K1C0 115 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 VASPP50552 380 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 POU3F1Q03052 451 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 GAMTQ14353 236 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 TCEAL8Q8IYN2 117 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 PCGF1Q9BSM1 259 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 C19orf24Q9BVV8 132 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 RNF181Q9P0P0 153 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 DDX60Q8IY21 1712 aaKnown RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 ARAP2Q8WZ64 1704 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 B4GALT2O60909 372 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SCGB1A1P11684 91 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 NTSR1P30989 418 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SEC11AP67812 179 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 EFNB1P98172 346 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM267Q0VDI3 215 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 FZD5Q13467 585 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 KIAA0040Q15053 153 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 MESTQ5EB52 335 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 PSRC1Q6PGN9 363 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM91Q6ZNR0 172 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 POC1AQ8NBT0 407 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 NUDT10Q8NFP7 164 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 OR10AD1Q8NGE0 317 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 OR1L4Q8NGR5 311 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SGCZQ96LD1 299 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 RNF39Q9H2S5 420 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 FUT9Q9Y231 359 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 WASHC3Q9Y3C0 194 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 TUBGCP6Q96RT7 1819 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 PLPP1O14494 284 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 ATXN8OSP0DMR3 200 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 EN2P19622 333 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 APLNRP35414 380 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SOX4Q06945 474 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 C1orf140Q5VVS0 124 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 OR2V1Q8NHB1 315 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SCAMP4Q969E2 229 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 ADAT1Q9BUB4 502 aaKnown RBP4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SLC38A11Q08AI6 406 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 BLNKQ8WV28 456 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SLAMF6Q96DU3 332 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 HRASLS2Q9NWW9 162 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 FMODQ06828 376 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 ACER2Q5QJU3 275 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 GLCCI1Q86VQ1 547 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 NUDT11Q96G61 164 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SDF2Q99470 211 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 CHST5Q9GZS9 411 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 WDR13Q9H1Z4 485 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 RICTORQ6R327 1708 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 A0A0B4J2E0 115 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 A0A1B0GX12 115 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 ZFPL1O95159 310 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 SOD3P08294 240 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 NHLRC1Q6VVB1 395 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 KIR3DX1Q9H7L2 352 aa4.19□□□□□ -1.74
SCN1A-220ENST00000641603 TBX18O95935 607 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 CD79AP11912 226 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 PTGER4P35408 488 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 MYPOPQ86VE0 399 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 CDC20BQ86Y33 519 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 WDFY1Q8IWB7 410 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 CHST14Q8NCH0 376 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 LINC00615Q96LM1 132 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 SDHCQ99643 169 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 MRPL37Q9BZE1 423 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 WBP1LQ9NX94 342 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A10PA6NDY2 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A18PA6NE21 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A16PA6NEW6 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A20PA6NIJ5 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A8PA6NJQ4 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A7PA6NKC0 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A22PA8MWA6 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A12PA8MX19 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A5PA8MXJ8 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A23PA8MXZ1 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 PEX12O00623 359 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A15PP0C7V4 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A13PP0C7W8 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A14PP0C7W9 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM90A24PP0C7X0 464 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 NHLH1Q02575 133 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 C17orf67Q0P5P2 114 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF385BQ569K4 471 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 RABEPKQ7Z6M1 372 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM151BQ8IW70 566 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ISOC2Q96AB3 205 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 OR51B6Q9H340 312 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 IGLV3-16A0A075B6K0 115 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms