RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 FAIMQ9NVQ4 179 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 MTFP1Q9UDX5 166 aa9.09□□□□□ -0.95
CLN3-248ENST00000636355 ITPR1Q14643 2758 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.08□□□□□ -0.96
CLN3-248ENST00000636355 ANKRD20A5PA0PJZ0 165 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 TMEM210A6NLX4 147 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 SERPINE3A8MV23 424 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 PLA2G10O15496 165 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 CYB5AP00167 134 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 GTF2F2P13984 249 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 MGMTP16455 207 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 MPZP25189 248 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 CHRNB4P30926 498 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 PRSS3P35030 304 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 GDNFP39905 211 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 GNG3P63215 75 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 MZT1Q08AG7 82 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 KLF9Q13886 244 aaPredicted RBP9.08□□□□□ -0.96
CLN3-248ENST00000636355 TAB1Q15750 504 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 ZNF718Q3SXZ3 478 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 OLFML2AQ68BL7 652 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 ZNF57Q68EA5 555 aaPredicted RBP9.08□□□□□ -0.96
CLN3-248ENST00000636355 ELP2Q6IA86 826 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 TMEM108Q6UXF1 575 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 LINC00596Q86U02 117 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 ZNF573Q86YE8 665 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 SPERTQ8NA61 448 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 DUSP18Q8NEJ0 188 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 OR1J1Q8NGS3 322 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 OR10R2Q8NGX6 335 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 ENKURQ8TC29 256 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 GPX8Q8TED1 209 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 HPSE2Q8WWQ2 592 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 OR5P3Q8WZ94 311 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 AQP3Q92482 292 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 PIGCQ92535 297 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 PPP1R14BQ96C90 147 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 MARS2Q96GW9 593 aaKnown RBP9.08□□□□□ -0.96
CLN3-248ENST00000636355 Q96M66 194 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 SPACA5Q96QH8 159 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 HIST1H2AAQ96QV6 131 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 C11orf54Q9H0W9 315 aaPredicted RBP9.08□□□□□ -0.96
CLN3-248ENST00000636355 LPAR5Q9H1C0 372 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 NGBQ9NPG2 151 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 MRPS7Q9Y2R9 242 aaKnown RBP9.08□□□□□ -0.96
CLN3-248ENST00000636355 CACNG2Q9Y698 323 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 SPENQ96T58 3664 aaKnown RBP9.08□□□□□ -0.96
CLN3-248ENST00000636355 HEATR1Q9H583 2144 aaKnown RBP9.08□□□□□ -0.96
CLN3-248ENST00000636355 ZZEF1O43149 2961 aa9.08□□□□□ -0.96
CLN3-248ENST00000636355 COL6A6A6NMZ7 2263 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 IGKV1-27A0A075B6S5 117 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 TRAV18A0A075B6X5 111 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 TRGV8A0A0C4DH27 118 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 LRP5LA4QPB2 252 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 ZNF850A8MQ14 1090 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 CRTAPO75718 401 aaPredicted RBP9.07□□□□□ -0.96
CLN3-248ENST00000636355 RBBP9O75884 186 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 MPIG6BO95866 241 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 CSTBP04080 98 aaKnown RBP9.07□□□□□ -0.96
CLN3-248ENST00000636355 TMEM225BP0DP42 221 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 HIST1H1DP16402 221 aaKnown RBP9.07□□□□□ -0.96
CLN3-248ENST00000636355 PTAFRP25105 342 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 SLC6A1P30531 599 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 RCVRNP35243 200 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 PMELP40967 661 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 CBX5P45973 191 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 RFX2P48378 723 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 NKX6-1P78426 367 aaPredicted RBP9.07□□□□□ -0.96
CLN3-248ENST00000636355 SORDQ00796 357 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 PDZK1IP1Q13113 114 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 HLXQ14774 488 aaPredicted RBP9.07□□□□□ -0.96
CLN3-248ENST00000636355 ZMYND11Q15326 602 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 RSU1Q15404 277 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 TSC22D1Q15714 1073 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 SLC22A6Q4U2R8 563 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 MOB3CQ70IA8 216 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 NRARPQ7Z6K4 114 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 MKXQ8IYA7 352 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 Q8IYB0 196 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 ZNF611Q8N823 705 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 NUP37Q8NFH4 326 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 OR52I2Q8NH67 350 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 SLC25A40Q8TBP6 338 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 KLF14Q8TD94 323 aaPredicted RBP9.07□□□□□ -0.96
CLN3-248ENST00000636355 NPRL2Q8WTW4 380 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 CREB3L1Q96BA8 519 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 GAL3ST1Q99999 423 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 MICU1Q9BPX6 476 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 OR2J1Q9GZK6 312 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 KCNK15Q9H427 330 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 POFUT1Q9H488 388 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 PLK3Q9H4B4 646 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 GPR160Q9UJ42 338 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 HSF4Q9ULV5 492 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 POLDIP2Q9Y2S7 368 aa9.07□□□□□ -0.96
CLN3-248ENST00000636355 ANKHD1Q8IWZ3 2542 aaKnown RBP9.06□□□□□ -0.96
CLN3-248ENST00000636355 FAM230AA0A1W2PPH8 454 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 A0A1W2PR80 420 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 FOXI3A8MTJ6 420 aaPredicted RBP9.06□□□□□ -0.96
CLN3-248ENST00000636355 J3QT63 122 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms