RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 IL19Q9UHD0 177 aa9.13□□□□□ -0.95
SS18-213ENST00000579640 A0A075B6Q4 140 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 IGKV1-27A0A075B6S5 117 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 A0A1W2PPR1 153 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 F5H5P2 479 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 SPRY3O43610 288 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 CYB5AP00167 134 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 IGHV1-46P01743 117 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 DANCRP0C864 163 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 CALCBP10092 127 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 NAT2P11245 290 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 PTGFRP43088 359 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 HAAOP46952 286 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 ZP1P60852 638 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 ZNF404Q494X3 552 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 DMRTC1Q5HYR2 192 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 MZT2AQ6P582 158 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 CRIP3Q6Q6R5 217 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 C20orf204Q6ZNR8 217 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 ANGPTL5Q86XS5 388 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 SAXO1Q8IYX7 474 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 PXT1Q8NFP0 134 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 ZNF671Q8TAW3 534 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 TNFAIP8L1Q8WVP5 186 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 GTF3AQ92664 365 aaKnown RBP9.12□□□□□ -0.95
SS18-213ENST00000579640 C14orf79Q96F83 325 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 S100A13Q99584 98 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 EGLN1Q9GZT9 426 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 NXF2Q9GZY0 626 aaKnown RBP9.12□□□□□ -0.95
SS18-213ENST00000579640 CLEC4MQ9H2X3 399 aaPredicted RBP9.12□□□□□ -0.95
SS18-213ENST00000579640 MMP27Q9H306 513 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 OR51I2Q9H344 312 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 UBTD1Q9HAC8 227 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 MRPS28Q9Y2Q9 187 aaKnown RBP9.12□□□□□ -0.95
SS18-213ENST00000579640 PMF1-BGLAPU3KQ54 211 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 ABCA4P78363 2273 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 J3QT63 122 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 HAX1O00165 279 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 ZNF780AO75290 641 aaPredicted RBP9.12□□□□□ -0.95
SS18-213ENST00000579640 BPNT1O95861 308 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 SLC2A2P11168 524 aaPredicted RBP9.12□□□□□ -0.95
SS18-213ENST00000579640 TNFRSF1AP19438 455 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 MPZP25189 248 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 GATA4P43694 442 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 OR3A4PP47883 348 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 POU3F4P49335 361 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 TNFAIP6P98066 277 aaPredicted RBP9.12□□□□□ -0.95
SS18-213ENST00000579640 IL24Q13007 206 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 PDZK1IP1Q13113 114 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 MAB21L1Q13394 359 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 TESK1Q15569 626 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 AWAT2Q6E213 333 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 TMEM200AQ86VY9 491 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 MKXQ8IYA7 352 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 OR4D6Q8NGJ1 314 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 MCFD2Q8NI22 146 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 TBC1D15Q8TC07 691 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 ERGIC1Q969X5 290 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 SLC25A28Q96A46 364 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 RFT1Q96AA3 541 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 MEGF10Q96KG7 1140 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 TRAF4Q9BUZ4 470 aaPredicted RBP9.12□□□□□ -0.95
SS18-213ENST00000579640 TLNRD1Q9H1K6 362 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 LIN7BQ9HAP6 207 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 PCDHB16Q9NRJ7 776 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 POLDIP2Q9Y2S7 368 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 ETV7Q9Y603 341 aa9.12□□□□□ -0.95
SS18-213ENST00000579640 RAI1Q7Z5J4 1906 aaPredicted RBP9.12□□□□□ -0.95
SS18-213ENST00000579640 ROS1P08922 2347 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 LOC100289279A0A1B0GTE1 492 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 TMEM225BP0DP42 221 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 ARSBP15848 533 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 ZNF154Q13106 437 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 GPR176Q14439 515 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 C11orf71Q6IPW1 123 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 HAGHLQ6PII5 290 aaPredicted RBP9.11□□□□□ -0.95
SS18-213ENST00000579640 GLIPR1L1Q6UWM5 242 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 ASCL4Q6XD76 172 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 RNF144BQ7Z419 303 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 WDR86Q86TI4 376 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 CALHM1Q8IU99 346 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 OR5D18Q8NGL1 313 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 FAM3DQ96BQ1 224 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 CMTM3Q96MX0 182 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 OR2V2Q96R30 315 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 METTL9Q9H1A3 318 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 RHOFQ9HBH0 211 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 IL36GQ9NZH8 169 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 SPATA2Q9UM82 520 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 SPTAN1Q13813 2472 aaKnown RBP9.11□□□□□ -0.95
SS18-213ENST00000579640 PKDREJQ9NTG1 2253 aa9.11□□□□□ -0.95
SS18-213ENST00000579640 BAHCC1Q9P281 2608 aa9.1□□□□□ -0.95
SS18-213ENST00000579640 ICE1Q9Y2F5 2266 aa9.1□□□□□ -0.95
SS18-213ENST00000579640 CD8AP01732 235 aa9.1□□□□□ -0.95
SS18-213ENST00000579640 GRPP07492 148 aa9.1□□□□□ -0.95
SS18-213ENST00000579640 SOD3P08294 240 aa9.1□□□□□ -0.95
SS18-213ENST00000579640 ACAA1P09110 424 aaPredicted RBP9.1□□□□□ -0.95
SS18-213ENST00000579640 CLDN12P56749 244 aa9.1□□□□□ -0.95
SS18-213ENST00000579640 P2RY14Q15391 338 aa9.1□□□□□ -0.95
SS18-213ENST00000579640 SLC25A26Q70HW3 274 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms