RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 GATBO75879 557 aaKnown RBP11.14□□□□□ -0.63
CLK3-213ENST00000563842 ADRA2CP18825 462 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 GLRA1P23415 457 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 CCR9P51686 369 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 ODF4Q2M2E3 257 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 WDR38Q5JTN6 314 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 ATPAF1Q5TC12 328 aaPredicted RBP11.14□□□□□ -0.63
CLK3-213ENST00000563842 USP43Q70EL4 1123 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 SYS1Q8N2H4 156 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 BPIFB2Q8N4F0 458 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 DHRSXQ8N5I4 330 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 OR2G2Q8NGZ5 317 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 PP6455Q8WZ26 134 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 TMIGD2Q96BF3 282 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 MED30Q96HR3 178 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 DMRTB1Q96MA1 342 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 MDFIQ99750 246 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 ALG8Q9BVK2 526 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 GPR173Q9NS66 373 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 RASL12Q9NYN1 266 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 NUP50Q9UKX7 468 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 CUBNO60494 3623 aa11.14□□□□□ -0.63
CLK3-213ENST00000563842 ANKRD61A6NGH8 418 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.13□□□□□ -0.63
CLK3-213ENST00000563842 J3QLW9 94 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 DVL1O14640 695 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 NDUFB3O43676 98 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 FSHBP01225 129 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 IGHA1P01876 353 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 ISG15P05161 165 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 ZNF19P17023 458 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 HAAOP46952 286 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 OR12D2P58182 307 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 HOXA4Q00056 320 aaPredicted RBP11.13□□□□□ -0.63
CLK3-213ENST00000563842 IL18R1Q13478 541 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 LRRC10Q5BKY1 277 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 ZNF691Q5VV52 312 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 STUMQ69YW2 141 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 HAGHLQ6PII5 290 aaPredicted RBP11.13□□□□□ -0.63
CLK3-213ENST00000563842 LHFPL3Q86UP9 236 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 PRSS35Q8N3Z0 413 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 CYGBQ8WWM9 190 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 AQP3Q92482 292 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 DACT3Q96B18 629 aaPredicted RBP11.13□□□□□ -0.63
CLK3-213ENST00000563842 C4orf36Q96KX1 117 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 CCL13Q99616 98 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 FGF23Q9GZV9 251 aaPredicted RBP11.13□□□□□ -0.63
CLK3-213ENST00000563842 DCLRE1BQ9H816 532 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 AMBNQ9NP70 447 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 NLKQ9UBE8 527 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 AASSQ9UDR5 926 aa11.13□□□□□ -0.63
CLK3-213ENST00000563842 LOC107986453A0A1B0GWG9 222 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 PQLC2LA1A4F0 135 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 J3QT63 122 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 CASQ2O14958 399 aaPredicted RBP11.12□□□□□ -0.63
CLK3-213ENST00000563842 RHBDL1O75783 438 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 PEX2P28328 305 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 FUT6P51993 359 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 GMFBP60983 142 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 MED21Q13503 144 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 ALKBH1Q13686 389 aaKnown RBP11.12□□□□□ -0.63
CLK3-213ENST00000563842 CNN3Q15417 329 aaKnown RBP11.12□□□□□ -0.63
CLK3-213ENST00000563842 RBMS3Q6XE24 437 aaKnown RBP11.12□□□□□ -0.63
CLK3-213ENST00000563842 ZFAND2BQ8WV99 257 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 ST8SIA4Q92187 359 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 UPRTQ96BW1 309 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 PELI1Q96FA3 418 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 CHST5Q9GZS9 411 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 NEK6Q9HC98 313 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 ERVK13-1Q9NX77 482 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 FRRS1LQ9P0K9 344 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 HHLA2Q9UM44 414 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 MYRFQ9Y2G1 1151 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 HSPE1-MOB4S4R3N1 261 aa11.12□□□□□ -0.63
CLK3-213ENST00000563842 A6NIN4 97 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 OR2AT4A6NND4 320 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 ZNF879B4DU55 563 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 C22orf46C9J442 243 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 H0YAE9 185 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 NOS1APO75052 506 aaPredicted RBP11.11□□□□□ -0.63
CLK3-213ENST00000563842 ACAA1P09110 424 aaPredicted RBP11.11□□□□□ -0.63
CLK3-213ENST00000563842 CCDC159P0C7I6 412 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 ZNF20P17024 532 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 DCKP27707 260 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 KIR3DL2P43630 455 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 TGM4P49221 684 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 GBX2P52951 348 aaPredicted RBP11.11□□□□□ -0.63
CLK3-213ENST00000563842 BPIFB3P59826 476 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 IL13RA1P78552 427 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 SMIM21Q3B7S5 101 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 DMRTC1Q5HYR2 192 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 OGFRL1Q5TC84 451 aaPredicted RBP11.11□□□□□ -0.63
CLK3-213ENST00000563842 METTL11BQ5VVY1 283 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 ZNF788Q6ZQV5 615 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 BTN2A1Q7KYR7 527 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 ZNF676Q8N7Q3 588 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 POC1AQ8NBT0 407 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 OR5T2Q8NGG2 359 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 OR52I1Q8NGK6 324 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 ANGPTL6Q8NI99 470 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms