RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 HIKESHIQ53FT3 197 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 NHLRC3Q5JS37 347 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 LEMD1Q68G75 181 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 TTC23LQ6PF05 361 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 ZNF571Q7Z3V5 609 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-208ENST00000551691 GLT6D1Q7Z4J2 308 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 SLC25A42Q86VD7 318 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 VRK2Q86Y07 508 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 PHF13Q86YI8 300 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-208ENST00000551691 OR52I1Q8NGK6 324 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 OR13F1Q8NGS4 319 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 OR2G2Q8NGZ5 317 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 FAM110BQ8TC76 370 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 NELFBQ8WX92 580 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 GTF3AQ92664 365 aaKnown RBP2.93□□□□□ -1.94
LIMA1-208ENST00000551691 RERGQ96A58 199 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-208ENST00000551691 S100PBPQ96BU1 408 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 NTNG2Q96CW9 530 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 MBOAT4Q96T53 435 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 APOL2Q9BQE5 337 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 SYT11Q9BT88 431 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 CHIAQ9BZP6 476 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 BPESC1Q9GZL8 116 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 NIPAL2Q9H841 368 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 FOLH1BQ9HBA9 442 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 ANKHQ9HCJ1 492 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 MRPS30Q9NP92 439 aaKnown RBP2.93□□□□□ -1.94
LIMA1-208ENST00000551691 MIEF1Q9NQG6 463 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 INPP5EQ9NRR6 644 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 IFNKQ9P0W0 207 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 CLCF1Q9UBD9 225 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 CTSZQ9UBR2 303 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 RSPH14Q9UHP6 348 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 COMMD3-BMI1R4GMX3 469 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 PLXNB1O43157 2135 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 DNAH10Q8IVF4 4471 aa2.93□□□□□ -1.94
LIMA1-208ENST00000551691 IGLV3-16A0A075B6K0 115 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 IGKV3D-11A0A0A0MRZ8 115 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 TRAV25A0A0B4J276 109 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 IGHV3-16A0A0C4DH30 117 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 LCE6AA0A183 80 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 MEX3AA1L020 520 aaKnown RBP2.92□□□□□ -1.94
LIMA1-208ENST00000551691 OR51F1A6NGY5 319 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 LOC110117498-PIK3R3F6TDL0 507 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 LYNX1G3V0Z9 82 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 NDUFS8O00217 210 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 DLGAP1O14490 977 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 SOCS3O14543 225 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 LIN7AO14910 233 aaPredicted RBP2.92□□□□□ -1.94
LIMA1-208ENST00000551691 RAB29O14966 203 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 C1orf105O95561 183 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 CSTAP01040 98 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 IGHG4P01861 327 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 STAG3L2P0CL84 134 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 LYNX1P0DP58 116 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 PGAM2P15259 253 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 CMA1P23946 247 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 STOMP27105 288 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 CMPK1P30085 196 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 COILP38432 576 aaPredicted RBP2.92□□□□□ -1.94
LIMA1-208ENST00000551691 NAA10P41227 235 aaPredicted RBP2.92□□□□□ -1.94
LIMA1-208ENST00000551691 SLC1A1P43005 524 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 CDKN1BP46527 198 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 RPS5P46782 204 aaKnown RBP2.92□□□□□ -1.94
LIMA1-208ENST00000551691 HNRNPA3P51991 378 aaKnown RBP2.92□□□□□ -1.94
LIMA1-208ENST00000551691 ATP12AP54707 1039 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 ERVK-25P63136 954 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 PAX5Q02548 391 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 LIPEQ05469 1076 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 CD300CQ08708 224 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 PAFAH1B3Q15102 231 aaKnown RBP2.92□□□□□ -1.94
LIMA1-208ENST00000551691 SLC1A5Q15758 541 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 MRPL23Q16540 153 aaKnown RBP2.92□□□□□ -1.94
LIMA1-208ENST00000551691 DEFB134Q4QY38 66 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 FBXO48Q5FWF7 155 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 PIGGQ5H8A4 983 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 DEFB121Q5J5C9 76 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 KPRPQ5T749 579 aaPredicted RBP2.92□□□□□ -1.94
LIMA1-208ENST00000551691 AGBL2Q5U5Z8 902 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 C22orf42Q6IC83 251 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 SNX20Q7Z614 316 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 C9orf40Q8IXQ3 194 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 KRT222Q8N1A0 295 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 PQLC3Q8N755 202 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 SIGLECL1Q8N7X8 197 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 OR6T1Q8NGN1 323 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 OR9A1PQ8NGU1 263 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 OR56B4Q8NH76 319 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 MCOLN3Q8TDD5 553 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 PAQR8Q8TEZ7 354 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 GLYATL2Q8WU03 294 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 KCTD4Q8WVF5 259 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 LRRC58Q96CX6 371 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 LINC00479Q96M42 142 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 MCHR1Q99705 422 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 ATP5SQ99766 215 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 ZNF670Q9BS34 389 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 NAT9Q9BTE0 207 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 DOHHQ9BU89 302 aa2.92□□□□□ -1.94
LIMA1-208ENST00000551691 OR8D2Q9GZM6 311 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms