RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 NIPAL2Q9H841 368 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 RNPEPL1Q9HAU8 725 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 TVP23BQ9NYZ1 205 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF319Q9P2F9 582 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 CTSZQ9UBR2 303 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 LAMP5Q9UJQ1 280 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 MPC1Q9Y5U8 109 aa5.64□□□□□ -1.51
CCDC88A-213ENST00000476903 IGHV3OR16-10A0A075B7F0 116 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 DNAJC9-AS1A6NH13 148 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 KRTAP29-1A8MX34 341 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 FAM25EA8MYX2 175 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 TNFRSF13BO14836 293 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 ATP5HO75947 161 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 CST4P01036 141 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 LHBP01229 141 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 GYPAP02724 150 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 IGHV4-38-2P0DP08 117 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 MUC1P15941 1255 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 ALOX5APP20292 161 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 PRTN3P24158 256 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 CFHR2P36980 270 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 BPIFB3P59826 476 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 ESRRGP62508 458 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 HOXA4Q00056 320 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 BAMBIQ13145 260 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 APOFQ13790 326 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 PTGES3Q15185 160 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 ATP6AP1Q15904 470 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 MICBQ29980 383 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 GPR157Q5UAW9 335 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 TEX36Q5VZQ5 186 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 FAHD1Q6P587 224 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 KCTD18Q6PI47 426 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 DEGS2Q6QHC5 323 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 WDR86Q86TI4 376 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 FAM90A1Q86YD7 464 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 BCL6BQ8N143 479 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 GALNT4Q8N4A0 578 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 C3orf56Q8N813 242 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 PNLDC1Q8NA58 520 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 OR8B12Q8NGG6 310 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 FAM81AQ8TBF8 368 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 LRRC29Q8WV35 223 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 GIMAP1Q8WWP7 306 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 ASB17Q8WXJ9 295 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 SLC25A28Q96A46 364 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 MICU1Q9BPX6 476 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 PCGF1Q9BSM1 259 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 CADM1Q9BY67 442 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 MROQ9BYG7 248 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 TLNRD1Q9H1K6 362 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 KRT84Q9NSB2 600 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 KAAG1Q9UBP8 84 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 KLHDC2Q9Y2U9 406 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 RHBDD3Q9Y3P4 386 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 LRP12Q9Y561 859 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 TMEM14AQ9Y6G1 99 aa5.63□□□□□ -1.51
CCDC88A-213ENST00000476903 IGHV3OR15-7A0A075B7D8 119 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 A0A0U1RQV5 110 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF816-ZNF321PA0A0X1KG74 233 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 TMEM269A0A1B0GVZ9 245 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 CCDC182A6NF36 153 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 ACOD1A6NK06 481 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 TMEM210A6NLX4 147 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF850A8MQ14 1090 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF879B4DU55 563 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 G3V2T6 193 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 CLDN34H7C241 214 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 P2RY10O00398 339 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 DVL1O14640 695 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 CDIPTO14735 213 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 PRKYO43930 277 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF254O75437 659 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 TOX4O94842 621 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 ECDO95905 644 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 MRPL3P09001 348 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 FCGR1AP12314 374 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 EGR1P18146 543 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 ACKR3P25106 362 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 FASP25445 335 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 DAPP51397 102 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 HCCSP53701 268 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 SUMO1P63165 101 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 CSNK2BP67870 215 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 PRDX4Q13162 271 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 ZNF829Q3KNS6 432 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 AWAT1Q58HT5 328 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 C1orf146Q5VVC0 180 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 METTL11BQ5VVY1 283 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 WDR82Q6UXN9 313 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 KCTD8Q6ZWB6 473 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 SLC36A1Q7Z2H8 476 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 COMMD2Q86X83 199 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 C11orf53Q8IXP5 236 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 OR5P3Q8WZ94 311 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 ST8SIA4Q92187 359 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 PIGCQ92535 297 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 C12orf43Q96C57 262 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 LYZL4Q96KX0 146 aa5.62□□□□□ -1.51
CCDC88A-213ENST00000476903 C1orf147Q96MC9 270 aaPredicted RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms