RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CUL9Q8IWT3 2517 aa14.37□□□□□ -0.11
CLCNKA-203ENST00000439316 A0A0U1RQV5 110 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 ZNF705EA8MWA4 302 aaPredicted RBP14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 TLX3O43711 291 aaPredicted RBP14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 MSR1P21757 451 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 FKBP2P26885 142 aaKnown RBP14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 BLVRBP30043 206 aaPredicted RBP14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 CLDN17P56750 224 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 TRA2AQ13595 282 aaKnown RBP eCLIP14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 TMEM88Q6PEY1 159 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 Q6ZSR3 168 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 LINC00518Q8N0U6 118 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 SUMF1Q8NBK3 374 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 AGBL5Q8NDL9 886 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 ZNF775Q96BV0 537 aaPredicted RBP14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 SAT2Q96F10 170 aaPredicted RBP14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 SMIM8Q96KF7 97 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 RASL10BQ96S79 203 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 ADAT1Q9BUB4 502 aaKnown RBP14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 SEC11CQ9BY50 192 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 STMND1H3BQB6 276 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 H7C2Y5 167 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 DHRS3O75911 302 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 NR2C1P13056 603 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 CCL4P13236 92 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 PTGER4P35408 488 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 SPEM2Q0P670 501 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 UBE2V2Q15819 145 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 C10orf128Q5T292 105 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 H3F3CQ6NXT2 135 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 FOXL2NBQ6ZUU3 175 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 NPRL2Q8WTW4 380 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 MAFIPQ8WZ33 124 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 CRB3Q9BUF7 120 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 TLNRD1Q9H1K6 362 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 UQCC1Q9NVA1 299 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 MEMO1Q9Y316 297 aa14.36□□□□□ -0.11
CLCNKA-203ENST00000439316 COL27A1Q8IZC6 1860 aaPredicted RBP14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 PRR33A8MZF0 331 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 TAAR5O14804 337 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 FGF5P12034 268 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 NUBP1P53384 320 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 EIF5AP63241 154 aaKnown RBP14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 ENDOGQ14249 297 aaKnown RBP14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 IL11RAQ14626 422 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 ARL6IP1Q15041 203 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 PPA1Q15181 289 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 CHRFAM7AQ494W8 412 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 DMRTC1Q5HYR2 192 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 RTL6Q6ICC9 239 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 DTX1Q86Y01 620 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 CBLN2Q8IUK8 224 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 SPAG16Q8N0X2 631 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 PP6455Q8WZ26 134 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 CHST5Q9GZS9 411 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 ZNF160Q9HCG1 818 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 TREM1Q9NP99 234 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 ACKR4Q9NPB9 350 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 ZNF175Q9Y473 711 aa14.35□□□□□ -0.11
CLCNKA-203ENST00000439316 RRP8O43159 456 aaKnown RBP14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 SNAPINO95295 136 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 SERPINA2P20848 420 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 CPT2P23786 658 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 CSNK1A1P48729 337 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 ZNF133P52736 654 aaPredicted RBP14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 S100A10P60903 97 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 TMEM200AQ86VY9 491 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 WNT2BQ93097 391 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 TMEM54Q969K7 222 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 NELFAQ9H3P2 528 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 TMEM231Q9H6L2 316 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 OR2S2Q9NQN1 319 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 C19orf25Q9UFG5 118 aaPredicted RBP14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 C14orf166Q9Y224 244 aaKnown RBP14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 CHCHD2Q9Y6H1 151 aaPredicted RBP14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 HOXB5P09067 269 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 HKR1P10072 659 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 FAHP16930 419 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 ECI1P42126 302 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 HIST1H3AP68431 136 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 H3F3AP84243 136 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 PHYHD1Q5SRE7 291 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 HIST2H3PS2Q5TEC6 136 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 LCN10Q6JVE6 187 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 HIST2H3AQ71DI3 136 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 RAB11FIP2Q7L804 512 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 FAM219AQ8IW50 185 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 GJC3Q8NFK1 279 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 HAS2Q92819 552 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 NABP1Q96AH0 204 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 NRIP2Q9BQI9 281 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 DEFB126Q9BYW3 111 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 SAV1Q9H4B6 383 aaPredicted RBP14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 TMEM9BQ9NQ34 198 aa14.34□□□□□ -0.11
CLCNKA-203ENST00000439316 IFNA2P01563 188 aa14.33□□□□□ -0.12
CLCNKA-203ENST00000439316 FCGR2AP12318 317 aa14.33□□□□□ -0.12
CLCNKA-203ENST00000439316 ZNF708P17019 499 aa14.33□□□□□ -0.12
CLCNKA-203ENST00000439316 PVALBP20472 110 aaPredicted RBP14.33□□□□□ -0.12
CLCNKA-203ENST00000439316 OTX1P32242 354 aaPredicted RBP14.33□□□□□ -0.12
CLCNKA-203ENST00000439316 NPBWR1P48145 328 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms