RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 OR2Z1Q8NG97 314 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 TECTBQ96PL2 329 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 CHCHD6Q9BRQ6 235 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 BPESC1Q9GZL8 116 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 CHODLQ9H9P2 273 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 SAP30LQ9HAJ7 183 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 EXOSC4Q9NPD3 245 aaKnown RBP8.37□□□□□ -1.07
CLN3-261ENST00000637686 GPR84Q9NQS5 396 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 CGGBP1Q9UFW8 167 aaPredicted RBP8.37□□□□□ -1.07
CLN3-261ENST00000637686 ZDHHC8Q9ULC8 765 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 DHDHQ9UQ10 334 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 CR1P17927 2039 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 TEP1Q99973 2627 aaKnown RBP8.36□□□□□ -1.07
CLN3-261ENST00000637686 IGHV4-61A0A0C4DH41 118 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 LOC100506127A0A0U1RQW1 187 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 PNMA8CA0A1B0GUJ8 204 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 hCG_38984A0A1B0GV85 526 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 MEGF11A6BM72 1044 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 CCDC160A6NGH7 325 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 TBX1O43435 398 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 LILRA1O75019 489 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 ADH4P08319 380 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 CD37P11049 281 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 SELEP16581 610 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 GIFP27352 417 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 CFPP27918 469 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 MAP2K3P46734 347 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 PSMD7P51665 324 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 TNFAIP6P98066 277 aaPredicted RBP8.36□□□□□ -1.07
CLN3-261ENST00000637686 LOXL1Q08397 574 aaPredicted RBP8.36□□□□□ -1.07
CLN3-261ENST00000637686 DYNC1I2Q13409 638 aaKnown RBP8.36□□□□□ -1.07
CLN3-261ENST00000637686 RIN1Q13671 783 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 HSD17B12Q53GQ0 312 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 ZNF529Q6P280 563 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 LINC00299Q6ZSB3 139 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 UTS2BQ765I0 119 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 MRPL21Q7Z2W9 205 aaKnown RBP8.36□□□□□ -1.07
CLN3-261ENST00000637686 CEACAM19Q7Z692 300 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 CDH26Q8IXH8 852 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 FTMTQ8N4E7 242 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 BHLHE23Q8NDY6 225 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 CSNK2A3Q8NEV1 391 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 OR8G5Q8NG78 346 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 OR14K1Q8NGZ2 314 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 OR2AE1Q8NHA4 323 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 OR51E1Q8TCB6 317 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 TSEN15Q8WW01 171 aaKnown RBP8.36□□□□□ -1.07
CLN3-261ENST00000637686 PP6455Q8WZ26 134 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 RPL3LQ92901 407 aaKnown RBP8.36□□□□□ -1.07
CLN3-261ENST00000637686 TMEM203Q969S6 136 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 TMEM106AQ96A25 262 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 SGK3Q96BR1 496 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 ELMOD3Q96FG2 381 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 REEP6Q96HR9 211 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 DIRC2Q96SL1 478 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 CENPOQ9BU64 300 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 REPIN1Q9BWE0 567 aaKnown RBP8.36□□□□□ -1.07
CLN3-261ENST00000637686 NAA50Q9GZZ1 169 aaKnown RBP8.36□□□□□ -1.07
CLN3-261ENST00000637686 SLITRK2Q9H156 845 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 ABCB9Q9NP78 766 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 BRD7Q9NPI1 651 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 SNTG1Q9NSN8 517 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 TREM2Q9NZC2 230 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 ZNF319Q9P2F9 582 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 GTF2A1LQ9UNN4 478 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 CACNG2Q9Y698 323 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 A3GALT2U3KPV4 340 aa8.36□□□□□ -1.07
CLN3-261ENST00000637686 IGHV1-69-2A0A0G2JMI3 117 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 GGT3PA6NGU5 568 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 CD300LBA8K4G0 201 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 IQCF6A8MYZ5 107 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 H0YL77 283 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 P2RY10O00398 339 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 PPIHO43447 177 aaKnown RBP8.35□□□□□ -1.07
CLN3-261ENST00000637686 RP2O75695 350 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 CD55P08174 381 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 IGFBP3P17936 291 aaPredicted RBP8.35□□□□□ -1.07
CLN3-261ENST00000637686 TNFSF4P23510 183 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 MYL9P24844 172 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 RIPPLY1Q0D2K3 151 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 HNRNPA0Q13151 305 aaKnown RBP8.35□□□□□ -1.07
CLN3-261ENST00000637686 TMEM42Q69YG0 159 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 C22orf42Q6IC83 251 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 SERPINA12Q8IW75 414 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 NKAIN3Q8N8D7 197 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 SEMA6DQ8NFY4 1073 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 OR5D14Q8NGL3 314 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 OR13C3Q8NGS6 347 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 OR13G1Q8NGZ3 307 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 PPP1R14AQ96A00 147 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 LYZL4Q96KX0 146 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 OR14A2Q96R54 314 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 SLC30A2Q9BRI3 323 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 MRI1Q9BV20 369 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 EGLN1Q9GZT9 426 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 DCSTAMPQ9H295 470 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 ZCCHC4Q9H5U6 513 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 NEK6Q9HC98 313 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 TMEM100Q9NV29 134 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 CCDC59Q9P031 241 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms