RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 OR5AS1Q8N127 324 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 ZNF610Q8N9Z0 462 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 SPERTQ8NA61 448 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 PXT1Q8NFP0 134 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 OR52N4Q8NGI2 321 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 OR5A2Q8NGI9 324 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 OR51A2Q8NGJ7 313 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 FGFBP3Q8TAT2 258 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 SSC4DQ8WTU2 575 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 HTRA1Q92743 480 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 SLC25A38Q96DW6 304 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 LYZL4Q96KX0 146 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 ABHD1Q96SE0 405 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 VKORC1Q9BQB6 163 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 GSX2Q9BZM3 304 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 PLK3Q9H4B4 646 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 C14orf119Q9NWQ9 140 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 IL36GQ9NZH8 169 aa6.9□□□□□ -1.3
VPS39-213ENST00000570062 MRPL15Q9P015 296 aaKnown RBP6.9□□□□□ -1.3
VPS39-213ENST00000570062 CNOT1A5YKK6 2376 aaKnown RBP6.9□□□□□ -1.31
VPS39-213ENST00000570062 TMEM272A0A1B0GTI8 110 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 TMEM14DPA8MWL7 114 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 K7EM74 188 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 EEF1E1O43324 174 aaKnown RBP6.89□□□□□ -1.31
VPS39-213ENST00000570062 LYRM1O43325 122 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 AKR7A2O43488 359 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 ORC5O43913 435 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 RAD51DO75771 328 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 MELTFP08582 738 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 GSTP1P09211 210 aaKnown RBP6.89□□□□□ -1.31
VPS39-213ENST00000570062 C1QTNF9P0C862 333 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 GLI4P10075 376 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 GTF2F2P13984 249 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 FAHP16930 419 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 TBPP20226 339 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 CPT2P23786 658 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 CDK2P24941 298 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 RCVRNP35243 200 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 PTH2RP49190 550 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 UCP2P55851 309 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 CLDN12P56749 244 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 ZNF92Q03936 586 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 PMPCAQ10713 525 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 CEACAM21Q3KPI0 293 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 LINC00303Q3SY05 128 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 HIKESHIQ53FT3 197 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 LCE3BQ5TA77 95 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 ASCL4Q6XD76 172 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 C3P1Q6ZMU1 363 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 GDPD3Q7L5L3 318 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 ZNF573Q86YE8 665 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 DOLPP1Q86YN1 238 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 MKXQ8IYA7 352 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 ZDHHC23Q8IYP9 409 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 Q8NA96 180 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 ZCCHC14Q8WYQ9 949 aaKnown RBP6.89□□□□□ -1.31
VPS39-213ENST00000570062 SLC7A6Q92536 515 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 RND1Q92730 232 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 ORAI1Q96D31 301 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 SNRNP40Q96DI7 357 aaKnown RBP6.89□□□□□ -1.31
VPS39-213ENST00000570062 ZNF75AQ96N20 296 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 MICU1Q9BPX6 476 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 KRTAP4-12Q9BQ66 201 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 SSBP4Q9BWG4 385 aaPredicted RBP6.89□□□□□ -1.31
VPS39-213ENST00000570062 DPAGT1Q9H3H5 408 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 NGBQ9NPG2 151 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 NKIRAS2Q9NYR9 191 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 NPAP1Q9NZP6 1156 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 CGGBP1Q9UFW8 167 aaPredicted RBP6.89□□□□□ -1.31
VPS39-213ENST00000570062 ING4Q9UNL4 249 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 RBMX2Q9Y388 322 aaKnown RBP6.89□□□□□ -1.31
VPS39-213ENST00000570062 FAM215AQ9Y5M1 114 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 CACNG2Q9Y698 323 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 EML6Q6ZMW3 1958 aa6.89□□□□□ -1.31
VPS39-213ENST00000570062 TEP1Q99973 2627 aaKnown RBP6.88□□□□□ -1.31
VPS39-213ENST00000570062 TRAV18A0A075B6X5 111 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A10PA6NDY2 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A18PA6NE21 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A16PA6NEW6 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A20PA6NIJ5 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A8PA6NJQ4 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A7PA6NKC0 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 CD300LBA8K4G0 201 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 SERPINE3A8MV23 424 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A22PA8MWA6 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A12PA8MX19 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 A8MXE2 369 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A5PA8MXJ8 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A23PA8MXZ1 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 H3BSH0 61 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 H7C417 338 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 LYZL6O75951 148 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 DHFRP00374 187 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 IGLV1-44P01699 117 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 LPLP06858 475 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM87AP0C7U9 286 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A15PP0C7V4 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A13PP0C7W8 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM90A14PP0C7W9 464 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms