RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SLC16A8O95907 504 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 IL5P05113 134 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 SLC35G6P0C7Q6 338 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR5H8P0DN80 308 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 PIPP12273 146 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 BCKDHAP12694 445 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 PGAM2P15259 253 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 ZNF19P17023 458 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TPSB2P20231 275 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 SERPINA4P29622 427 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR10J1P30954 320 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 HOXC9P31274 260 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 RPL22P35268 128 aaKnown RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 DLSTP36957 453 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 DCTP40126 519 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 GPR6P46095 362 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 RPS10P46783 165 aaKnown RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 CAV2P51636 162 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 GAS1P54826 345 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 MFAP4P55083 255 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 BACE1P56817 501 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 RAB38P57729 211 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TAS2R50P59544 299 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 S100A10P60903 97 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 RPS23P62266 143 aaKnown RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 PRDX4Q13162 271 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR2F1Q13607 317 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 MELKQ14680 651 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TPSAB1Q15661 275 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 VAMP3Q15836 100 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 BATFQ16520 125 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 IL17AQ16552 155 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 ASPRV1Q53RT3 343 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 PDZD11Q5EBL8 140 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 XKR7Q5GH72 579 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 SLC25A53Q5H9E4 307 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 ELFN2Q5R3F8 820 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TMEM69Q5SWH9 247 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR2T2Q6IF00 324 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 RPL22L1Q6P5R6 122 aaKnown RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 LCTLQ6UWM7 567 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 DHRS11Q6UWP2 260 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 ZNF730Q6ZMV8 503 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TEX43Q6ZNM6 134 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TMEM182Q6ZP80 229 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 MBOAT2Q6ZWT7 520 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 SLC25A26Q70HW3 274 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 H1FNTQ75WM6 255 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 MON1BQ7L1V2 547 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 SLC16A9Q7RTY1 509 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 SLC36A1Q7Z2H8 476 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 NIT1Q86X76 327 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 C20orf196Q8IYI0 205 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 FAM24BQ8N5W8 94 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 ARL14EPQ8N8R7 260 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 SLC30A7Q8NEW0 376 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 SLC26A10Q8NG04 563 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR4D9Q8NGE8 314 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR52E4Q8NGH9 312 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR5D16Q8NGK9 328 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR6N1Q8NGY5 312 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR1P1Q8NH06 330 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR5W2Q8NH69 310 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 RHEBL1Q8TAI7 183 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 GPR148Q8TDV2 347 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 STYXQ8WUJ0 223 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 EEF1AKMT1Q8WVE0 214 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 HMGB4Q8WW32 186 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 THAP4Q8WY91 577 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 GGHQ92820 318 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 ISOC2Q96AB3 205 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 MUCL1Q96DR8 90 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 RNF125Q96EQ8 232 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 DUX5Q96PT3 197 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 NPY6RQ99463 290 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 GPR22Q99680 433 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 MGLLQ99685 303 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TIMM29Q9BSF4 260 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 PBDC1Q9BVG4 233 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 GABARAPL3Q9BY60 117 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 CHRNA10Q9GZZ6 450 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 FAM234AQ9H0X4 552 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 MAGIXQ9H6Y5 334 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 HHATLQ9HCP6 504 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 LYRM4Q9HD34 91 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 EXOSC4Q9NPD3 245 aaKnown RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 MEPEQ9NQ76 525 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 CA10Q9NS85 328 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 HCFC1R1Q9NWW0 138 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 CNOT2Q9NZN8 540 aaKnown RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR5AC2Q9NZP5 309 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 MSRB1Q9NZV6 116 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 MRPL15Q9P015 296 aaKnown RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 VAX2Q9UIW0 290 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 VPREB3Q9UKI3 123 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 HHLA2Q9UM44 414 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 SLC17A4Q9Y2C5 497 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 WDR45Q9Y484 360 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 CITO14578 2027 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 NRXN2Q9P2S2 1712 aa2.84□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms