RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 KCNG2Q9UJ96 466 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 HILPDAQ9Y5L2 63 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 OR6C68A6NDL8 312 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 TVP23AA6NH52 213 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 NOS3P29474 1203 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 THBS3P49746 956 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 MAGOHP61326 146 aaKnown RBP12.93□□□□□ -0.34
CLK3-223ENST00000568488 DYNC1I2Q13409 638 aaKnown RBP12.93□□□□□ -0.34
CLK3-223ENST00000568488 ZFAND6Q6FIF0 208 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 SMARCD3Q6STE5 483 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 DCXRQ7Z4W1 244 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 CROCCP2Q86T23 111 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 OR52H1Q8NGJ2 320 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 OR2T27Q8NH04 317 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 TSPEARQ8WU66 669 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 CAPSLQ8WWF8 208 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 LYZL4Q96KX0 146 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.93□□□□□ -0.34
CLK3-223ENST00000568488 LRP12Q9Y561 859 aa12.93□□□□□ -0.34
CLK3-223ENST00000568488 TMEM210A6NLX4 147 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 ZNF850A8MQ14 1090 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 ZNF682O95780 498 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 PYCR1P32322 319 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 CEBPDP49716 269 aaPredicted RBP12.92□□□□□ -0.34
CLK3-223ENST00000568488 GSK3AP49840 483 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 FGD3Q5JSP0 725 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 LDLRAD2Q5SZI1 272 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 FKBP9P1Q75LS8 142 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 OR8J3Q8NGG0 315 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 OR13D1Q8NGV5 346 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 SLAMF6Q96DU3 332 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 RNF170Q96K19 258 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 RCHY1Q96PM5 261 aa12.92□□□□□ -0.34
CLK3-223ENST00000568488 SPARCP09486 303 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 AZGP1P25311 298 aaKnown RBP12.91□□□□□ -0.34
CLK3-223ENST00000568488 OMPP47874 163 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 CX3CR1P49238 355 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 DYNLT3P51808 116 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 PRDX4Q13162 271 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 ZNF273Q14593 569 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 ABCA11PQ4W5N1 156 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 IFI44LQ53G44 452 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 WDR93Q6P2C0 686 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 THAP5Q7Z6K1 395 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 CYP4Z1Q86W10 505 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 CSNK2A3Q8NEV1 391 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 SDSLQ96GA7 329 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 IFT27Q9BW83 186 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 C1orf21Q9H246 121 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 ZNF222Q9UK12 451 aa12.91□□□□□ -0.34
CLK3-223ENST00000568488 hCG_38984A0A1B0GV85 526 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 ODF3BA8MYP8 253 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 FAM220BPB1ANY3 271 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 PSKH1P11801 424 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 PIPP12273 146 aaPredicted RBP12.9□□□□□ -0.34
CLK3-223ENST00000568488 SLC6A6P31641 620 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 RAB25P57735 213 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 LYPD4Q6UWN0 246 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 C8orf86Q6ZUL3 223 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 FAM57BQ71RH2 274 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 FTMTQ8N4E7 242 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 LINC00471Q8N535 108 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 PROKR2Q8NFJ6 384 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 OR2T12Q8NG77 320 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 FANK1Q8TC84 345 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 OR5P3Q8WZ94 311 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 PIGCQ92535 297 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 ANKRD19PQ9H560 264 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 MPC1Q9Y5U8 109 aa12.9□□□□□ -0.34
CLK3-223ENST00000568488 SH2D7A6NKC9 451 aaPredicted RBP12.89□□□□□ -0.35
CLK3-223ENST00000568488 NUDT19A8MXV4 375 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 ARPC3O15145 178 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 H1F0P07305 194 aaKnown RBP12.89□□□□□ -0.35
CLK3-223ENST00000568488 CFL1P23528 166 aaKnown RBP12.89□□□□□ -0.35
CLK3-223ENST00000568488 CD24P25063 80 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 HSD11B1P28845 292 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 MYCNOSP40205 109 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 ECI1P42126 302 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 SNCBQ16143 134 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 KLHL12Q53G59 568 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 C9orf152Q5JTZ5 239 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 SLC35F1Q5T1Q4 408 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 ZNF626Q68DY1 528 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 TIGD4Q8IY51 512 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 OR51L1Q8NGJ5 315 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 NDNFQ8TB73 568 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 BCAS4Q8TDM0 211 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 AKR1E2Q96JD6 320 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 HIST1H2AAQ96QV6 131 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 OR52D1Q9H346 318 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 BRD7Q9NPI1 651 aa12.89□□□□□ -0.35
CLK3-223ENST00000568488 KRCC1Q9NPI7 259 aaPredicted RBP12.89□□□□□ -0.35
CLK3-223ENST00000568488 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.89□□□□□ -0.35
CLK3-223ENST00000568488 V9GYY5 206 aaPredicted RBP12.89□□□□□ -0.35
CLK3-223ENST00000568488 MEX3AA1L020 520 aaKnown RBP12.88□□□□□ -0.35
CLK3-223ENST00000568488 RFPL4AA6NLU0 287 aa12.88□□□□□ -0.35
CLK3-223ENST00000568488 ZNF878C9JN71 531 aa12.88□□□□□ -0.35
CLK3-223ENST00000568488 RFPL4AL1F8VTS6 287 aa12.88□□□□□ -0.35
CLK3-223ENST00000568488 FXYD1O00168 92 aa12.88□□□□□ -0.35
CLK3-223ENST00000568488 SLC1A7O00341 560 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms