RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 SELEP16581 610 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 SPI1P17947 270 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 EGR1P18146 543 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 GSTM3P21266 225 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 FMO3P31513 532 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 CRYBB2P43320 205 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 GPR6P46095 362 aaPredicted RBP3.81□□□□□ -1.8
NUP54-206ENST00000508465 DAPP51397 102 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 PRKXP51817 358 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 TIRAPP58753 221 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 LMO4P61968 165 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 VAMP2P63027 116 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 TNFAIP6P98066 277 aaPredicted RBP3.81□□□□□ -1.8
NUP54-206ENST00000508465 COX10Q12887 443 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 TAF13Q15543 124 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 MOGQ16653 247 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 PCGF3Q3KNV8 242 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 FAM120AOSQ5T036 256 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 PLBD1Q6P4A8 553 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 DNM1P34Q6PK57 102 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 UNQ6126/PRO20091Q6UXV3 157 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 DCXRQ7Z4W1 244 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 NR2C2APQ86WQ0 139 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 HIPK1Q86Z02 1210 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 CCDC28AQ8IWP9 274 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 PAPD5Q8NDF8 572 aaKnown RBP3.81□□□□□ -1.8
NUP54-206ENST00000508465 BBS1Q8NFJ9 593 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 OR2T33Q8NG76 320 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 OR10S1Q8NGN2 331 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 OR2T4Q8NH00 348 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 CLDND2Q8NHS1 167 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 NUDCD2Q8WVJ2 157 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 ITLN1Q8WWA0 313 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 ZMYND19Q96E35 227 aaPredicted RBP3.81□□□□□ -1.8
NUP54-206ENST00000508465 MED30Q96HR3 178 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 AMELYQ99218 206 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 RBM4Q9BWF3 364 aaKnown RBP3.81□□□□□ -1.8
NUP54-206ENST00000508465 NMNAT2Q9BZQ4 307 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 ZNF556Q9HAH1 456 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 PNRC2Q9NPJ4 139 aaKnown RBP3.81□□□□□ -1.8
NUP54-206ENST00000508465 TVP23BQ9NYZ1 205 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 DNAJB9Q9UBS3 223 aa3.81□□□□□ -1.8
NUP54-206ENST00000508465 CHD3Q12873 2000 aaKnown RBP3.8□□□□□ -1.8
NUP54-206ENST00000508465 A0A1W2PPH5 198 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ISPDA4D126 451 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 F5H5P2 479 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 RGS10O43665 173 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 PLPP2O43688 288 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 SELENOFO60613 162 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 IFNGP01579 166 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 BTF3P20290 206 aaKnown RBP3.8□□□□□ -1.8
NUP54-206ENST00000508465 KITLGP21583 273 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ACHEP22303 614 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 CA6P23280 308 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 IGFBP5P24593 272 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 EPHA2P29317 976 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 GRK5P34947 590 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 POLR2IP36954 125 aaKnown RBP3.8□□□□□ -1.8
NUP54-206ENST00000508465 PMELP40967 661 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ENTPD1P49961 510 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 SLC25A1P53007 311 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 CDH15P55291 814 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 HILS1P60008 231 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 CDK5Q00535 292 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ZNF92Q03936 586 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ECH1Q13011 328 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 EIF2B1Q14232 305 aaKnown RBP3.8□□□□□ -1.8
NUP54-206ENST00000508465 GK2Q14410 553 aaPredicted RBP3.8□□□□□ -1.8
NUP54-206ENST00000508465 SNAPC1Q16533 368 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 HFEQ30201 348 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 SNAI3Q3KNW1 292 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 CHRFAM7AQ494W8 412 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 KLHL12Q53G59 568 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 FAM201AQ5SY85 155 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 C1orf146Q5VVC0 180 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 FAM166AQ6J272 317 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 RPL13AP3Q6NVV1 102 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 SLC27A4Q6P1M0 643 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 SHQ1Q6PI26 577 aaKnown RBP3.8□□□□□ -1.8
NUP54-206ENST00000508465 DPY19L4Q7Z388 723 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ERI1Q8IV48 349 aaKnown RBP3.8□□□□□ -1.8
NUP54-206ENST00000508465 C19orf18Q8NEA5 215 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 DEFB108BQ8NET1 73 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 OR10AD1Q8NGE0 317 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 OR5L1Q8NGL2 311 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 OR13G1Q8NGZ3 307 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 OR2AE1Q8NHA4 323 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ZNF420Q8TAQ5 688 aaPredicted RBP3.8□□□□□ -1.8
NUP54-206ENST00000508465 TEX47Q8TBZ9 253 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 WIPF2Q8TF74 440 aaPredicted RBP3.8□□□□□ -1.8
NUP54-206ENST00000508465 THEM6Q8WUY1 208 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 SLAMF6Q96DU3 332 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ELMOD3Q96FG2 381 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ZNF582Q96NG8 517 aaPredicted RBP3.8□□□□□ -1.8
NUP54-206ENST00000508465 OR2V2Q96R30 315 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 COQ7Q99807 217 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ATF6BQ99941 703 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 COPS4Q9BT78 406 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 ABHD6Q9BV23 337 aa3.8□□□□□ -1.8
NUP54-206ENST00000508465 C1QTNF5Q9BXJ0 243 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms