RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 KLHL36Q8N4N3 616 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 PLPP7Q8NBV4 271 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 OR2G2Q8NGZ5 317 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 OR51F2Q8NH61 342 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 HAVCR2Q8TDQ0 301 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 RAB1CQ92928 201 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 TIMD4Q96H15 378 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 FAM71F1Q96KD3 344 aaPredicted RBP10□□□□□ -0.81
SQSTM1-206ENST00000466342 CNBD2Q96M20 576 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 OR2V2Q96R30 315 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 ADAT1Q9BUB4 502 aaKnown RBP10□□□□□ -0.81
SQSTM1-206ENST00000466342 NARFLQ9H6Q4 476 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 SCN3BQ9NY72 215 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 FRRS1LQ9P0K9 344 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 A0A1B0GTI1 187 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 F5H5P2 479 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 P2RY10O00398 339 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 CST4P01036 141 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 CCDC159P0C7I6 412 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 UBCP0CG48 685 aaKnown RBP9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 CCL1P22362 96 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 CD200P41217 278 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 KIR3DL2P43630 455 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 SRP9P49458 86 aaKnown RBP9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 CCR9P51686 369 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 NANOS3P60323 173 aaKnown RBP9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 ALKBH1Q13686 389 aaKnown RBP9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 OR2G6Q5TZ20 316 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 TMPRSS11AQ6ZMR5 421 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 DOK3Q7L591 496 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 KRT74Q7RTS7 529 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 C1QL2Q7Z5L3 287 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 CELF2-AS1Q8N7Q2 184 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 OR52N1Q8NH53 320 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 ITLN1Q8WWA0 313 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 DVL3Q92997 716 aaPredicted RBP9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 RAB39BQ96DA2 213 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 MEGF10Q96KG7 1140 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 PAPOLGQ9BWT3 736 aaKnown RBP9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 Q9H521 79 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 CHCHD3Q9NX63 227 aaKnown RBP9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 CLEC2DQ9UHP7 191 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 WIPI2Q9Y4P8 454 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 V9GYS6 101 aa9.99□□□□□ -0.81
SQSTM1-206ENST00000466342 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 ZNF816-ZNF321PA0A0X1KG74 233 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 A0A1B0GVI7 797 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 DHRS7CA6NNS2 312 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 DENRO43583 198 aaKnown RBP9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 ISG15P05161 165 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 CDK1P06493 297 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 PRTN3P24158 256 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 FPR2P25090 351 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 C21orf33P30042 268 aaPredicted RBP9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 GNALP38405 381 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 GATA4P43694 442 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 TGM4P49221 684 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 GBX2P52951 348 aaPredicted RBP9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 SLC35A2P78381 396 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 RIPPLY1Q0D2K3 151 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 PRDX4Q13162 271 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 MAB21L1Q13394 359 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 ODF4Q2M2E3 257 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 AVPI1Q5T686 147 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 ZBTB37Q5TC79 503 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 SPERTQ8NA61 448 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 CCDC54Q8NEL0 328 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 OR14K1Q8NGZ2 314 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 NANPQ8TBE9 248 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 CCL17Q92583 94 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 MYDGFQ969H8 173 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 ZNF665Q9H7R5 613 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 ABCB9Q9NP78 766 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 PAK1IP1Q9NWT1 392 aaPredicted RBP9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 PIGLQ9Y2B2 252 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 TPRKBQ9Y3C4 175 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 RHBDD3Q9Y3P4 386 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 PCDHGB5Q9Y5G0 923 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 MPC1Q9Y5U8 109 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 CACNG2Q9Y698 323 aa9.98□□□□□ -0.81
SQSTM1-206ENST00000466342 LOC107986453A0A1B0GWG9 222 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 TMEM212A6NML5 194 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 ANXA2P2A6NMY6 339 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 OR4C45A6NMZ5 311 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 ZNF850A8MQ14 1090 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 PTGES3LE9PB15 166 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 E9PI62 339 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 MYL12BO14950 172 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 SYT7O43581 403 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 PTBP3O95758 552 aaKnown RBP9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 FAHP16930 419 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 ZNF12P17014 697 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 CRHBPP24387 322 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 MZT1Q08AG7 82 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 CCDC58Q4VC31 144 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 RBM48Q5RL73 367 aaKnown RBP9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 TMEM244Q5VVB8 128 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 RNLSQ5VYX0 342 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 ZNF485Q8NCK3 441 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms