RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 POC1AQ8NBT0 407 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 CSNK2A3Q8NEV1 391 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 GJC3Q8NFK1 279 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 SPACA9Q96E40 222 aaPredicted RBP9.94□□□□□ -0.82
USP4-205ENST00000431357 RRNAD1Q96FB5 475 aaKnown RBP9.94□□□□□ -0.82
USP4-205ENST00000431357 OR6C1Q96RD1 312 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 DEFB126Q9BYW3 111 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 V9GYS6 101 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 GON4LQ3T8J9 2241 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 A0A1W2PP11 408 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 ADAP1O75689 374 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 CSTBP04080 98 aaKnown RBP9.94□□□□□ -0.82
USP4-205ENST00000431357 FAM157CP0CG43 387 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 MSR1P21757 451 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 RAB4BP61018 213 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 PJVKQ0ZLH3 352 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 IL15RAQ13261 267 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 ANKRD55Q3KP44 614 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 TMEM176BQ3YBM2 270 aaPredicted RBP9.94□□□□□ -0.82
USP4-205ENST00000431357 C10orf128Q5T292 105 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 ZNF574Q6ZN55 896 aaPredicted RBP9.94□□□□□ -0.82
USP4-205ENST00000431357 Q6ZSR3 168 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 TMPPEQ6ZT21 453 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 SLC16A14Q7RTX9 510 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 SPAG16Q8N0X2 631 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 S100A13Q99584 98 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 MESP1Q9BRJ9 268 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 CRB3Q9BUF7 120 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 ST6GALNAC5Q9BVH7 336 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 PECRQ9BY49 303 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 ZNF576Q9H609 170 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 ZNF160Q9HCG1 818 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 EHFQ9NZC4 300 aa9.94□□□□□ -0.82
USP4-205ENST00000431357 C14orf166Q9Y224 244 aaKnown RBP9.94□□□□□ -0.82
USP4-205ENST00000431357 DNAH14Q0VDD8 3507 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 ZNF814B7Z6K7 855 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 SIGLEC5O15389 551 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 DHRS3O75911 302 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 DKK1O94907 266 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 OPN1LWP04000 364 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 CPT2P23786 658 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 BLVRBP30043 206 aaPredicted RBP9.93□□□□□ -0.82
USP4-205ENST00000431357 CSNK1A1P48729 337 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 ZNF133P52736 654 aaPredicted RBP9.93□□□□□ -0.82
USP4-205ENST00000431357 CLDN17P56750 224 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 BLOC1S1P78537 153 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 SIGLEC14Q08ET2 396 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 SMAD2Q15796 467 aaKnown RBP9.93□□□□□ -0.82
USP4-205ENST00000431357 GFOD2Q3B7J2 385 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 CHRFAM7AQ494W8 412 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 ZNF385CQ66K41 422 aaPredicted RBP9.93□□□□□ -0.82
USP4-205ENST00000431357 FOXL2NBQ6ZUU3 175 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 PUSL1Q8N0Z8 303 aaKnown RBP9.93□□□□□ -0.82
USP4-205ENST00000431357 TMED6Q8WW62 240 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 GTF3AQ92664 365 aaKnown RBP9.93□□□□□ -0.82
USP4-205ENST00000431357 RASL10BQ96S79 203 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 SPSB2Q99619 263 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 SEC11CQ9BY50 192 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 NELFAQ9H3P2 528 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 C1orf123Q9NWV4 160 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 LPAR3Q9UBY5 353 aa9.93□□□□□ -0.82
USP4-205ENST00000431357 ZNF729A6NN14 1252 aaPredicted RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 RRP8O43159 456 aaKnown RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 KCNAB3O43448 404 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 VAMP5O95183 116 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 TIAF1O95411 115 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 RPS2P15880 293 aaKnown RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 SFTPDP35247 375 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 ZNF84P51523 738 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 DHRS7BQ6IAN0 325 aaPredicted RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 HAGHLQ6PII5 290 aaPredicted RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 WDSUB1Q8N9V3 476 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 BOLLQ8N9W6 283 aaKnown RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 ADAMTS17Q8TE56 1095 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 TMEM54Q969K7 222 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 SLC5A7Q9GZV3 580 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 OR5AC2Q9NZP5 309 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 PCDHGA1Q9Y5H4 931 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 PHF3Q92576 2039 aaKnown RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 ZNF705EA8MWA4 302 aaPredicted RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 STMND1H3BQB6 276 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 GPR31O00270 319 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 ACTL6AO96019 429 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 FBP1P09467 338 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 GLRA1P23415 457 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 RBMXP38159 391 aaKnown RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 HIST1H3AP68431 136 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 RAB32Q13637 225 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 EIF2S3LQ2VIR3 472 aaKnown RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 HIST2H3PS2Q5TEC6 136 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 HIST2H3AQ71DI3 136 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 LDLRAD3Q86YD5 345 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 HAS2Q92819 552 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 ZC3H10Q96K80 434 aaKnown RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 OR10C1Q96KK4 312 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 LYZL4Q96KX0 146 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 NAA11Q9BSU3 229 aaPredicted RBP9.92□□□□□ -0.82
USP4-205ENST00000431357 DUSP23Q9BVJ7 150 aa9.92□□□□□ -0.82
USP4-205ENST00000431357 CHST5Q9GZS9 411 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms