RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 CMTM3Q96MX0 182 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 LRP12Q9Y561 859 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 ATRXP46100 2492 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 ZNF729A6NN14 1252 aaPredicted RBP11.49□□□□□ -0.57
PTPRN-202ENST00000409251 GEMIN2O14893 280 aaKnown RBP11.49□□□□□ -0.57
PTPRN-202ENST00000409251 DUS4LO95620 317 aaKnown RBP11.49□□□□□ -0.57
PTPRN-202ENST00000409251 CTLA4P16410 223 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 TOMM34Q15785 309 aaPredicted RBP11.49□□□□□ -0.57
PTPRN-202ENST00000409251 RPUSD3Q6P087 351 aaKnown RBP11.49□□□□□ -0.57
PTPRN-202ENST00000409251 SLC38A9Q8NBW4 561 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 WNT16Q9UBV4 365 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 CACFD1Q9UGQ2 172 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 RAB22AQ9UL26 194 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 NBASA2RRP1 2371 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 A0A1B0GTI1 187 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 TLCD2A6NGC4 264 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 SERINC4A6NH21 518 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 H3BML4 177 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 SCDO00767 359 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 DUX1O43812 170 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 GABRR1P24046 479 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 EIF5AP63241 154 aaKnown RBP11.49□□□□□ -0.57
PTPRN-202ENST00000409251 ACKR1Q16570 336 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 CHRFAM7AQ494W8 412 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 PLXDC2Q6UX71 529 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 FNDC9Q8TBE3 224 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 OCSTAMPQ9BR26 566 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 H0YL77 283 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 ST8SIA5O15466 376 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 FAM157CP0CG43 387 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 MGAT2Q10469 447 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 RHEBQ15382 184 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 GLIPR1L1Q6UWM5 242 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 ABHD12BQ7Z5M8 362 aaPredicted RBP11.48□□□□□ -0.57
PTPRN-202ENST00000409251 SLC30A7Q8NEW0 376 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 MR1Q95460 341 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 CYTL1Q9NRR1 136 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 GDF2Q9UK05 429 aaPredicted RBP11.48□□□□□ -0.57
PTPRN-202ENST00000409251 DMXL1Q9Y485 3027 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 A0A087WUJ7 227 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 TGIF2-C20orf24A0A0A6YYL0 155 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 A0A1W2PR80 420 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 TCAPO15273 167 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 ZNF735P0CB33 412 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 SLC35E2P0CK97 266 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 OPRM1P35372 400 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 FASLGP48023 281 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 SNU13P55769 128 aaKnown RBP11.48□□□□□ -0.57
PTPRN-202ENST00000409251 HLA-BQ31612 363 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 NKAIN1Q4KMZ8 207 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 HLA-DQA1Q5Y7H0 255 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 ERGIC1Q969X5 290 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 UTP23Q9BRU9 249 aaKnown RBP11.48□□□□□ -0.57
PTPRN-202ENST00000409251 LYRM4Q9HD34 91 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 MED29Q9NX70 200 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 ICAM5Q9UMF0 924 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 C14orf166Q9Y224 244 aaKnown RBP11.48□□□□□ -0.57
PTPRN-202ENST00000409251 SHANK1Q9Y566 2161 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 IFNA21P01568 189 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 H2AFB1P0C5Y9 115 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 CD79AP11912 226 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 SLC6A9P48067 706 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 EFNA3P52797 238 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 MLF1P58340 268 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.48□□□□□ -0.57
PTPRN-202ENST00000409251 NSUN5P2Q63ZY6 315 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 KLHL24Q6TFL4 600 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 TERB2Q8NHR7 220 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 TAAR8Q969N4 342 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 C14orf144Q96I85 54 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 SLC2A8Q9NY64 477 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 METTL1Q9UBP6 276 aaKnown RBP11.48□□□□□ -0.57
PTPRN-202ENST00000409251 MEMO1Q9Y316 297 aa11.48□□□□□ -0.57
PTPRN-202ENST00000409251 AKAP6Q13023 2319 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 K7ESF4 209 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 LAMTOR5O43504 91 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 WISP1O95388 367 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 PPICP45877 212 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 FHL1Q13642 323 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 PDCD1Q15116 288 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 TMEM128Q5BJH2 165 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 SLC35D3Q5M8T2 416 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 OTOSQ8NHW6 89 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 MISP3Q96FF7 219 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 MAGT1Q9H0U3 335 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 FAM212BQ9NTI7 297 aaPredicted RBP11.47□□□□□ -0.57
PTPRN-202ENST00000409251 NOSIPQ9Y314 301 aaKnown RBP11.47□□□□□ -0.57
PTPRN-202ENST00000409251 FLVCR1Q9Y5Y0 555 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 SPTA1P02549 2419 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 FGF16O43320 207 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 F10P00742 488 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 CCL7P80098 99 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 HSD11B2P80365 405 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 DCDP81605 110 aaKnown RBP11.47□□□□□ -0.57
PTPRN-202ENST00000409251 PRTGQ2VWP7 1150 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 HIST2H3PS2Q5TEC6 136 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 ZNF385CQ66K41 422 aaPredicted RBP11.47□□□□□ -0.57
PTPRN-202ENST00000409251 OR51T1Q8NGJ9 327 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 OR1J1Q8NGS3 322 aa11.47□□□□□ -0.57
PTPRN-202ENST00000409251 SOX7Q9BT81 388 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms