RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 RTL6Q6ICC9 239 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 DRAM2Q6UX65 266 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 GALNTL5Q7Z4T8 443 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 LRRC18Q8N456 261 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 OR51F2Q8NH61 342 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 CCDC74BQ96LY2 380 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 DUSP23Q9BVJ7 150 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 CHST5Q9GZS9 411 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 TREM1Q9NP99 234 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 DNAJB11Q9UBS4 358 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 PIGLQ9Y2B2 252 aa16.43■□□□□ 0.22
CPSF3-201ENST00000238112 ASCC3Q8N3C0 2202 aaKnown RBP16.43■□□□□ 0.22
CPSF3-201ENST00000238112 OR5H15A6NDH6 313 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 SIGLEC6O43699 453 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 ONECUT2O95948 504 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 HAGHLQ6PII5 290 aaPredicted RBP16.42■□□□□ 0.22
CPSF3-201ENST00000238112 CRIP3Q6Q6R5 217 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 HAS2Q92819 552 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 TM2D1Q9BX74 207 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 HPF1Q9NWY4 346 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 LPAR3Q9UBY5 353 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 A0A087WZY1 265 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 NPIPA2E9PIF3 369 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 NPIPA3F8WFD2 350 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 MTRF1O75570 445 aaKnown RBP16.42■□□□□ 0.22
CPSF3-201ENST00000238112 SFTPBP07988 381 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 FAM157CP0CG43 387 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 RPS2P15880 293 aaKnown RBP16.42■□□□□ 0.22
CPSF3-201ENST00000238112 EIF5AP63241 154 aaKnown RBP16.42■□□□□ 0.22
CPSF3-201ENST00000238112 FLI1Q01543 452 aaPredicted RBP16.42■□□□□ 0.22
CPSF3-201ENST00000238112 ENDOGQ14249 297 aaKnown RBP16.42■□□□□ 0.22
CPSF3-201ENST00000238112 PHYHD1Q5SRE7 291 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 C10orf128Q5T292 105 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 NSUN5P2Q63ZY6 315 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 IL34Q6ZMJ4 242 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 SLC16A14Q7RTX9 510 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 FAM219AQ8IW50 185 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 PIGTQ969N2 578 aa16.42■□□□□ 0.22
CPSF3-201ENST00000238112 IFNA2P01563 188 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 RBMXP38159 391 aaKnown RBP16.41■□□□□ 0.22
CPSF3-201ENST00000238112 SRSF3P84103 164 aaKnown RBP16.41■□□□□ 0.22
CPSF3-201ENST00000238112 H3F3AP84243 136 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 TMEM88Q6PEY1 159 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 LDLRAD3Q86YD5 345 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 SPAG16Q8N0X2 631 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 RBM24Q9BX46 236 aaKnown RBP16.41■□□□□ 0.22
CPSF3-201ENST00000238112 SLC5A7Q9GZV3 580 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 C1orf123Q9NWV4 160 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 IGHV3-15A0A0B4J1V0 119 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 GABRR1P24046 479 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 PPA1Q15181 289 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 RAET1LQ5VY80 246 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 EIF5AL1Q6IS14 154 aaKnown RBP16.41■□□□□ 0.22
CPSF3-201ENST00000238112 ESX1Q8N693 406 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 TMEM54Q969K7 222 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 ZNF385AQ96PM9 386 aaKnown RBP16.41■□□□□ 0.22
CPSF3-201ENST00000238112 AKIRIN1Q9H9L7 192 aaPredicted RBP16.41■□□□□ 0.22
CPSF3-201ENST00000238112 ACKR4Q9NPB9 350 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 PLEKHJ1Q9NW61 149 aa16.41■□□□□ 0.22
CPSF3-201ENST00000238112 H7C2Y5 167 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 M0R135 149 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 EIF1BO60739 113 aaKnown RBP16.4■□□□□ 0.22
CPSF3-201ENST00000238112 APOC1P02654 83 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 SERPINA5P05154 406 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 EPHA8P29322 1005 aaPredicted RBP16.4■□□□□ 0.22
CPSF3-201ENST00000238112 ECI1P42126 302 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 STARD6P59095 220 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 PJVKQ0ZLH3 352 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 H3F3CQ6NXT2 135 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 TMEM200AQ86VY9 491 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 FOXRED2Q8IWF2 684 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 OR4A4PQ8NGN8 299 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 ADAMTS17Q8TE56 1095 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 ZNF799Q96GE5 643 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 SHDQ96IW2 340 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 NDRG3Q9UGV2 375 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 CARHSP1Q9Y2V2 147 aaKnown RBP16.4■□□□□ 0.22
CPSF3-201ENST00000238112 PCDHGA1Q9Y5H4 931 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 TAAR5O14804 337 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 CA11O75493 328 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 IL15RAQ13261 267 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 MRPL14Q6P1L8 145 aaKnown RBP16.4■□□□□ 0.22
CPSF3-201ENST00000238112 C6orf201Q7Z4U5 140 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 TDHQ8IZJ6 230 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 NABP1Q96AH0 204 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 C10orf35Q96D05 121 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 ZNF2Q9BSG1 426 aaPredicted RBP16.4■□□□□ 0.22
CPSF3-201ENST00000238112 ADAT1Q9BUB4 502 aaKnown RBP16.4■□□□□ 0.22
CPSF3-201ENST00000238112 HRH4Q9H3N8 390 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 TMEM231Q9H6L2 316 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 PLEK2Q9NYT0 353 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 PRELID3BQ9Y3B1 194 aa16.4■□□□□ 0.22
CPSF3-201ENST00000238112 MED12Q93074 2177 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 DHHO43323 396 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 VAMP5O95183 116 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 PTGER4P35408 488 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 ZNF133P52736 654 aaPredicted RBP16.39■□□□□ 0.21
CPSF3-201ENST00000238112 PCOLCEQ15113 449 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 C10orf91Q5T1B1 145 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 SULF2Q8IWU5 870 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms