RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ZNF107Q9UII5 783 aaPredicted RBP9.14□□□□□ -0.95
CLN3-248ENST00000636355 MRPS28Q9Y2Q9 187 aaKnown RBP9.14□□□□□ -0.95
CLN3-248ENST00000636355 N6AMT1Q9Y5N5 214 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 MPC1Q9Y5U8 109 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 SLC25A15Q9Y619 301 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 FAM208BQ5VWN6 2430 aa9.14□□□□□ -0.95
CLN3-248ENST00000636355 TMEM14DPA8MWL7 114 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 A8MXE2 369 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 SULT1C2O00338 296 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 GMDSO60547 372 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 ZNF780AO75290 641 aaPredicted RBP9.13□□□□□ -0.95
CLN3-248ENST00000636355 NRASP01111 189 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 RAC2P15153 192 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 CDK2P24941 298 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 WNT5AP41221 380 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 CA7P43166 264 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 PTH2RP49190 550 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 INPP1P49441 399 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 RBP2P50120 134 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 IDH3GP51553 393 aaPredicted RBP9.13□□□□□ -0.95
CLN3-248ENST00000636355 FUT6P51993 359 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 QRFPP83859 136 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 TNK1Q13470 666 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 GPR176Q14439 515 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 UBE2V2Q15819 145 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 BAK1Q16611 211 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 MZT2BQ6NZ67 158 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 Q6ZNX1 250 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 RFPL4BQ6ZWI9 263 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 CENPSQ8N2Z9 138 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 POC5Q8NA72 575 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 ZSCAN4Q8NAM6 433 aaPredicted RBP9.13□□□□□ -0.95
CLN3-248ENST00000636355 C19orf18Q8NEA5 215 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 OR56B2PQ8NGI1 322 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 MUCL1Q96DR8 90 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 BORCS8Q96FH0 119 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 ZC3HAV1LQ96H79 300 aaKnown RBP9.13□□□□□ -0.95
CLN3-248ENST00000636355 C1orf147Q96MC9 270 aaPredicted RBP9.13□□□□□ -0.95
CLN3-248ENST00000636355 GPER1Q99527 375 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 SOX7Q9BT81 388 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 SLC22A4Q9H015 551 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 SCPEP1Q9HB40 452 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 MRPL15Q9P015 296 aaKnown RBP9.13□□□□□ -0.95
CLN3-248ENST00000636355 TBC1D24Q9ULP9 559 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 SLC7A11Q9UPY5 501 aa9.13□□□□□ -0.95
CLN3-248ENST00000636355 RBMX2Q9Y388 322 aaKnown RBP9.13□□□□□ -0.95
CLN3-248ENST00000636355 A0A0G2JNJ9 132 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 OR5B21A6NL26 309 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 ZNHIT1O43257 154 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 ECDO95905 644 aaPredicted RBP9.12□□□□□ -0.95
CLN3-248ENST00000636355 VSIG8P0DPA2 414 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 PPP3CBP16298 524 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 CCNOP22674 350 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 PTGFRP43088 359 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 RAD52P43351 418 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 TAS2R20P59543 309 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 ACTBP60709 375 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 ZP1P60852 638 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 PPP1CBP62140 327 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 ACTG1P63261 375 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 PMPCAQ10713 525 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 DYRK1AQ13627 763 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 PRR30Q53SZ7 412 aaPredicted RBP9.12□□□□□ -0.95
CLN3-248ENST00000636355 ZNF474Q6S9Z5 364 aaPredicted RBP9.12□□□□□ -0.95
CLN3-248ENST00000636355 ZDHHC23Q8IYP9 409 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 SAXO1Q8IYX7 474 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 ZNF101Q8IZC7 436 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 RPRMLQ8N4K4 120 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 PXT1Q8NFP0 134 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 RND1Q92730 232 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 YIPF5Q969M3 257 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 FAM46BQ96A09 425 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 MRPS24Q96EL2 167 aaKnown RBP9.12□□□□□ -0.95
CLN3-248ENST00000636355 MS4A3Q96HJ5 214 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 COX4I2Q96KJ9 171 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 ABHD1Q96SE0 405 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 S100A13Q99584 98 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 URM1Q9BTM9 101 aaKnown RBP9.12□□□□□ -0.95
CLN3-248ENST00000636355 PAPOLGQ9BWT3 736 aaKnown RBP9.12□□□□□ -0.95
CLN3-248ENST00000636355 TMEM59Q9BXS4 323 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 RHOFQ9HBH0 211 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 C14orf119Q9NWQ9 140 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 TAS2R8Q9NYW2 309 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 Q9UFV3 132 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 TINAGQ9UJW2 476 aa9.12□□□□□ -0.95
CLN3-248ENST00000636355 ANKRD30BLA7E2S9 258 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 CD300LBA8K4G0 201 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 IQCF6A8MYZ5 107 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 EEF1E1-BLOC1S5C9J1V9 151 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 EEF1E1O43324 174 aaKnown RBP9.11□□□□□ -0.95
CLN3-248ENST00000636355 CHRM2P08172 466 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 CECR9P0C854 216 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 ZNF35P13682 527 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 CPT2P23786 658 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 OR3A4PP47883 348 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 ATP1B3P54709 279 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 RPS23P62266 143 aaKnown RBP9.11□□□□□ -0.95
CLN3-248ENST00000636355 UNC119Q13432 240 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 PPA1Q15181 289 aa9.11□□□□□ -0.95
CLN3-248ENST00000636355 FBXL19-AS1Q494R0 122 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms