RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 MAP2K3P46734 347 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 CXCR4P61073 352 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 KCTD8Q6ZWB6 473 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 SLC35F2Q8IXU6 374 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 ZDHHC23Q8IYP9 409 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 PYDC1Q8WXC3 89 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 UPRTQ96BW1 309 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 RBM4BQ9BQ04 359 aaKnown RBP12.7□□□□□ -0.38
TRIM28-203ENST00000593582 MS4A7Q9GZW8 240 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-203ENST00000593582 PBOV1Q9GZY1 135 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 TLNRD1Q9H1K6 362 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 RIBC2Q9H4K1 309 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 ADGRL4Q9HBW9 690 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 CLN6Q9NWW5 311 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 HAO2Q9NYQ3 351 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 ZNF69Q9UC07 566 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 SAC3D1A6NKF1 404 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 PRR32B1ATL7 298 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 C22orf46C9J442 243 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 ZNF670-ZNF695F2Z2N8 137 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 LIPFP07098 398 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 ATP6V1B1P15313 513 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 CFHR2P36980 270 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 EGR3Q06889 387 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 POU4F2Q12837 409 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 THAP5Q7Z6K1 395 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 SIGLECL1Q8N7X8 197 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 PNLDC1Q8NA58 520 aaKnown RBP12.69□□□□□ -0.38
TRIM28-203ENST00000593582 OR51E1Q8TCB6 317 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 C12orf43Q96C57 262 aaKnown RBP12.69□□□□□ -0.38
TRIM28-203ENST00000593582 RNF170Q96K19 258 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 GABARAPL3Q9BY60 117 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 SMURF1Q9HCE7 757 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 GPR84Q9NQS5 396 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 KAAG1Q9UBP8 84 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 WARS2Q9UGM6 360 aaKnown RBP12.69□□□□□ -0.38
TRIM28-203ENST00000593582 NUFIP1Q9UHK0 495 aaKnown RBP12.69□□□□□ -0.38
TRIM28-203ENST00000593582 GTF2A1LQ9UNN4 478 aa12.69□□□□□ -0.38
TRIM28-203ENST00000593582 IGHV3OR16-10A0A075B7F0 116 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 TRAV40A0A0B4J280 105 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 SRRM5B3KS81 715 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 DVL1O14640 695 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 MTRF1O75570 445 aaKnown RBP12.68□□□□□ -0.38
TRIM28-203ENST00000593582 IGHV4-38-2P0DP08 117 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 POLR2IP36954 125 aaKnown RBP12.68□□□□□ -0.38
TRIM28-203ENST00000593582 MTNR1AP48039 350 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 FGF12P61328 243 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 RIPPLY1Q0D2K3 151 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 C11orf91Q3C1V1 193 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 FAM76BQ5HYJ3 339 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 C12orf54Q6X4T0 127 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 DOK3Q7L591 496 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 SLC36A1Q7Z2H8 476 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 BCL6BQ8N143 479 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-203ENST00000593582 ZDHHC22Q8N966 263 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 SCCPDHQ8NBX0 429 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 OR51G2Q8NGK0 314 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 OR8J1Q8NGP2 316 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 HPSE2Q8WWQ2 592 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 RPL3LQ92901 407 aaKnown RBP12.68□□□□□ -0.38
TRIM28-203ENST00000593582 GCDHQ92947 438 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-203ENST00000593582 FAM71F1Q96KD3 344 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-203ENST00000593582 APOL4Q9BPW4 351 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 RASSF4Q9H2L5 321 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 MOB1AQ9H8S9 216 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 ESM1Q9NQ30 184 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 ORC6Q9Y5N6 252 aa12.68□□□□□ -0.38
TRIM28-203ENST00000593582 LOC110117498-PIK3R3F6TDL0 507 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 HAX1O00165 279 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 ECDO95905 644 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-203ENST00000593582 HTR1FP30939 366 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 GPM6AP51674 278 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 CDC42P60953 191 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 UBA52P62987 128 aaKnown RBP12.67□□□□□ -0.38
TRIM28-203ENST00000593582 GNG3P63215 75 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 MFGE8Q08431 387 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-203ENST00000593582 KPNB1Q14974 876 aaKnown RBP12.67□□□□□ -0.38
TRIM28-203ENST00000593582 TUSC1Q2TAM9 212 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 CEACAM21Q3KPI0 293 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 WDR38Q5JTN6 314 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 BCL2L15Q5TBC7 163 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 ZBTB37Q5TC79 503 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 ZFP1Q6P2D0 407 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 KRT74Q7RTS7 529 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 C10orf67Q8IYJ2 551 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 OR10Z1Q8NGY1 313 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 ST8SIA4Q92187 359 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 RFKQ969G6 155 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 CCL13Q99616 98 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 DNAJB11Q9UBS4 358 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 PIGLQ9Y2B2 252 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 R4GMQ9 66 aa12.67□□□□□ -0.38
TRIM28-203ENST00000593582 ZNF879B4DU55 563 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 ZNF732B4DXR9 585 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-203ENST00000593582 MAGEB4O15481 346 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-203ENST00000593582 DHRS3O75911 302 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 TOX4O94842 621 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 PLATP00750 562 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 IGLV3-1P01715 115 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms