RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ELMOD2Q8IZ81 293 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 RFLNBQ8N5W9 214 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 BOLLQ8N9W6 283 aaKnown RBP11.21□□□□□ -0.61
CLK3-216ENST00000564468 ZNF555Q8NEP9 628 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 NANPQ8TBE9 248 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 OR51E1Q8TCB6 317 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 OR5P3Q8WZ94 311 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 ITPKCQ96DU7 683 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 MRPL48Q96GC5 212 aaKnown RBP11.21□□□□□ -0.61
CLK3-216ENST00000564468 RNF170Q96K19 258 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 MBOAT4Q96T53 435 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 SLC29A1Q99808 456 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 TMPRSS13Q9BYE2 586 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 C7orf69Q9H7B7 122 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 CLN8Q9UBY8 286 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 MRM2Q9UI43 246 aaKnown RBP11.21□□□□□ -0.61
CLK3-216ENST00000564468 ENPP5Q9UJA9 477 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 LOC100130705A0A1B0GUX0 176 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 OOEPA6NGQ2 149 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 ENTPD6O75354 484 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 SRSF10O75494 262 aaKnown RBP11.2□□□□□ -0.62
CLK3-216ENST00000564468 LHBP01229 141 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 TTRP02766 147 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 MUC1P15941 1255 aaPredicted RBP11.2□□□□□ -0.62
CLK3-216ENST00000564468 ZFP36P26651 326 aaKnown RBP11.2□□□□□ -0.62
CLK3-216ENST00000564468 CFHR2P36980 270 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 RBMXP38159 391 aaKnown RBP11.2□□□□□ -0.62
CLK3-216ENST00000564468 PITPNBP48739 271 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 MFGE8Q08431 387 aaPredicted RBP11.2□□□□□ -0.62
CLK3-216ENST00000564468 ZNF154Q13106 437 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 LIPNQ5VXI9 398 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 BTNL3Q6UXE8 466 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 ZNF826PQ6ZT77 177 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 GCSAMQ8N6F7 178 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 CCDC54Q8NEL0 328 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 DEFB108BQ8NET1 73 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 OR5A2Q8NGI9 324 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 OR10Z1Q8NGY1 313 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 UBE2FQ969M7 185 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 FAM71F1Q96KD3 344 aaPredicted RBP11.2□□□□□ -0.62
CLK3-216ENST00000564468 MRI1Q9BV20 369 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 TLNRD1Q9H1K6 362 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 METTL17Q9H7H0 456 aaPredicted RBP11.2□□□□□ -0.62
CLK3-216ENST00000564468 ERVK-18Q9QC07 812 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 PIGLQ9Y2B2 252 aa11.2□□□□□ -0.62
CLK3-216ENST00000564468 A0A0A6YYJ9 748 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 DAPL1A0PJW8 107 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 OR5B21A6NL26 309 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 DHRS7CA6NNS2 312 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 C3orf80F5H4A9 247 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 SLC16A6O15403 523 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 MAGEB4O15481 346 aaPredicted RBP11.19□□□□□ -0.62
CLK3-216ENST00000564468 RPP14O95059 124 aaKnown RBP11.19□□□□□ -0.62
CLK3-216ENST00000564468 APOL3O95236 402 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 ZNF12P17014 697 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 CD80P33681 288 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 PSMB10P40306 273 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 SEC61A1P61619 476 aaKnown RBP11.19□□□□□ -0.62
CLK3-216ENST00000564468 GNG3P63215 75 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 MICBQ29980 383 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 CEACAM21Q3KPI0 293 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 FAM76BQ5HYJ3 339 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 ZNF684Q5T5D7 378 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 TEX36Q5VZQ5 186 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 CD276Q5ZPR3 534 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 SFRP4Q6FHJ7 346 aaPredicted RBP11.19□□□□□ -0.62
CLK3-216ENST00000564468 WDR82Q6UXN9 313 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 DOK3Q7L591 496 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 SSX6Q7RTT6 188 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 C1QL2Q7Z5L3 287 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 C11orf53Q8IXP5 236 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 RHOXF1Q8NHV9 184 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 LRRC29Q8WV35 223 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 RNFT2Q96EX2 444 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 ADI1Q9BV57 179 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 FAM118AQ9NWS6 357 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 SMPD3Q9NY59 655 aaPredicted RBP11.19□□□□□ -0.62
CLK3-216ENST00000564468 INSIG2Q9Y5U4 225 aa11.19□□□□□ -0.62
CLK3-216ENST00000564468 LOC105371242A0A075B767 164 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 A0A1B0GVI7 797 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 TRAPPC2LH3BP13 241 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 CDIPTO14735 213 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 ADAM20O43506 726 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 TCF21O43680 179 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 NRASP01111 189 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 C11orf91Q3C1V1 193 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 CLVS2Q5SYC1 327 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 WDR25Q64LD2 544 aaPredicted RBP11.18□□□□□ -0.62
CLK3-216ENST00000564468 MOB3CQ70IA8 216 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 WDR86Q86TI4 376 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 CATSPERDQ86XM0 798 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 EGFL6Q8IUX8 553 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 ENTHD1Q8IYW4 607 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 ACBD7Q8N6N7 88 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 PACRGLQ8N7B6 248 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 C19orf18Q8NEA5 215 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 ZNF671Q8TAW3 534 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 RAB40AQ8WXH6 277 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 PPP1R14AQ96A00 147 aa11.18□□□□□ -0.62
CLK3-216ENST00000564468 C12orf43Q96C57 262 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms