RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 MBOAT4Q96T53 435 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 SLC29A1Q99808 456 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 TMPRSS13Q9BYE2 586 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 C7orf69Q9H7B7 122 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 CLN8Q9UBY8 286 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 MRM2Q9UI43 246 aaKnown RBP11.21□□□□□ -0.61
CLK3-213ENST00000563842 ENPP5Q9UJA9 477 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 LOC100130705A0A1B0GUX0 176 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 OOEPA6NGQ2 149 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 ENTPD6O75354 484 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 SRSF10O75494 262 aaKnown RBP11.2□□□□□ -0.62
CLK3-213ENST00000563842 LHBP01229 141 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 TTRP02766 147 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 MUC1P15941 1255 aaPredicted RBP11.2□□□□□ -0.62
CLK3-213ENST00000563842 ZFP36P26651 326 aaKnown RBP11.2□□□□□ -0.62
CLK3-213ENST00000563842 CFHR2P36980 270 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 RBMXP38159 391 aaKnown RBP11.2□□□□□ -0.62
CLK3-213ENST00000563842 PITPNBP48739 271 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 MFGE8Q08431 387 aaPredicted RBP11.2□□□□□ -0.62
CLK3-213ENST00000563842 ZNF154Q13106 437 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 LIPNQ5VXI9 398 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 BTNL3Q6UXE8 466 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 ZNF826PQ6ZT77 177 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 GCSAMQ8N6F7 178 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 CCDC54Q8NEL0 328 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 DEFB108BQ8NET1 73 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 OR5A2Q8NGI9 324 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 OR10Z1Q8NGY1 313 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 UBE2FQ969M7 185 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 FAM71F1Q96KD3 344 aaPredicted RBP11.2□□□□□ -0.62
CLK3-213ENST00000563842 MRI1Q9BV20 369 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 TLNRD1Q9H1K6 362 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 METTL17Q9H7H0 456 aaPredicted RBP11.2□□□□□ -0.62
CLK3-213ENST00000563842 ERVK-18Q9QC07 812 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 PIGLQ9Y2B2 252 aa11.2□□□□□ -0.62
CLK3-213ENST00000563842 STAB1Q9NY15 2570 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 A0A0A6YYJ9 748 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 DAPL1A0PJW8 107 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 OR5B21A6NL26 309 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 DHRS7CA6NNS2 312 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 C3orf80F5H4A9 247 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 SLC16A6O15403 523 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 MAGEB4O15481 346 aaPredicted RBP11.19□□□□□ -0.62
CLK3-213ENST00000563842 PHF1O43189 567 aaPredicted RBP11.19□□□□□ -0.62
CLK3-213ENST00000563842 RPP14O95059 124 aaKnown RBP11.19□□□□□ -0.62
CLK3-213ENST00000563842 APOL3O95236 402 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 ZNF12P17014 697 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 CD80P33681 288 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 PSMB10P40306 273 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 SEC61A1P61619 476 aaKnown RBP11.19□□□□□ -0.62
CLK3-213ENST00000563842 GNG3P63215 75 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 MICBQ29980 383 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 CEACAM21Q3KPI0 293 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 FAM76BQ5HYJ3 339 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 ZNF684Q5T5D7 378 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 TEX36Q5VZQ5 186 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 CD276Q5ZPR3 534 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 SFRP4Q6FHJ7 346 aaPredicted RBP11.19□□□□□ -0.62
CLK3-213ENST00000563842 WDR82Q6UXN9 313 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 DOK3Q7L591 496 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 SSX6Q7RTT6 188 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 C1QL2Q7Z5L3 287 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 C11orf53Q8IXP5 236 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 RHOXF1Q8NHV9 184 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 LRRC29Q8WV35 223 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 TMEM158Q8WZ71 300 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 RNFT2Q96EX2 444 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 ADI1Q9BV57 179 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 FAM118AQ9NWS6 357 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 SMPD3Q9NY59 655 aaPredicted RBP11.19□□□□□ -0.62
CLK3-213ENST00000563842 INSIG2Q9Y5U4 225 aa11.19□□□□□ -0.62
CLK3-213ENST00000563842 LOC105371242A0A075B767 164 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 A0A1B0GVI7 797 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 TRAPPC2LH3BP13 241 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 CDIPTO14735 213 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 ADAM20O43506 726 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 TCF21O43680 179 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 NRASP01111 189 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 C11orf91Q3C1V1 193 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 CLVS2Q5SYC1 327 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 WDR25Q64LD2 544 aaPredicted RBP11.18□□□□□ -0.62
CLK3-213ENST00000563842 MOB3CQ70IA8 216 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 WDR86Q86TI4 376 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 CATSPERDQ86XM0 798 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 EGFL6Q8IUX8 553 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 ENTHD1Q8IYW4 607 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 ACBD7Q8N6N7 88 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 PACRGLQ8N7B6 248 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 C19orf18Q8NEA5 215 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 ZNF671Q8TAW3 534 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 RAB40AQ8WXH6 277 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 PPP1R14AQ96A00 147 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 C12orf43Q96C57 262 aaKnown RBP11.18□□□□□ -0.62
CLK3-213ENST00000563842 MMP26Q9NRE1 261 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 KAAG1Q9UBP8 84 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 GNG8Q9UK08 70 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 EXOGQ9Y2C4 368 aaKnown RBP11.18□□□□□ -0.62
CLK3-213ENST00000563842 AUP1Q9Y679 476 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 V9GYS6 101 aa11.18□□□□□ -0.62
CLK3-213ENST00000563842 COL6A5A8TX70 2615 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms