RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 PSG1P11464 419 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 IL9P15248 144 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 CD33P20138 364 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 CD22P20273 847 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 CXCR1P25024 350 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 RPS20P60866 119 aaKnown RBP8.41□□□□□ -1.06
CLIP1-214ENST00000540539 TRA2BP62995 288 aaKnown RBP8.41□□□□□ -1.06
CLIP1-214ENST00000540539 SIRPAP78324 504 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 RAB32Q13637 225 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 RSPO2Q6UXX9 243 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-214ENST00000540539 CHRDL2Q6WN34 429 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 BHLHA15Q7RTS1 189 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-214ENST00000540539 LRRC70Q7Z2Q7 622 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 TMPRSS12Q86WS5 348 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 SCN4BQ8IWT1 228 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 CYB561D1Q8N8Q1 229 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 LFNGQ8NES3 379 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 DNAJA3Q96EY1 480 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 PCED1BQ96HM7 432 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 REEP6Q96HR9 211 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 TRIB3Q96RU7 358 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 CD180Q99467 661 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 MED10Q9BTT4 135 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 ALG12Q9BV10 488 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 VAMP8Q9BV40 100 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 ARL15Q9NXU5 204 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 MSRAQ9UJ68 235 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 LAMTOR2Q9Y2Q5 125 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 CPSF4LA6NMK7 179 aaKnown RBP8.4□□□□□ -1.06
CLIP1-214ENST00000540539 C5orf67F2Z3F1 127 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 IRAK2O43187 625 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 PRH1P02810 166 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 CSRP1P21291 193 aaKnown RBP8.4□□□□□ -1.06
CLIP1-214ENST00000540539 RAB28P51157 221 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 HYAL1Q12794 435 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 RAB30Q15771 203 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 PRSS53Q2L4Q9 553 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 PIP5KL1Q5T9C9 394 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 FDX2Q6P4F2 183 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 KLHL24Q6TFL4 600 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 STAC2Q6ZMT1 411 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 OR11L1Q8NGX0 322 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 ERGIC1Q969X5 290 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 ARRDC3Q96B67 414 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 NUDT16L1Q9BRJ7 211 aaKnown RBP8.4□□□□□ -1.06
CLIP1-214ENST00000540539 NMNAT2Q9BZQ4 307 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 MEMO1Q9Y316 297 aa8.4□□□□□ -1.06
CLIP1-214ENST00000540539 RBFOX3A6NFN3 312 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 ZNF736B4DX44 427 aaPredicted RBP8.4□□□□□ -1.07
CLIP1-214ENST00000540539 FAHP16930 419 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 DGKAP23743 735 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 AOAHP28039 575 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 SELENOVP59797 346 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 CCL20P78556 96 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 RBPJQ06330 500 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 OLIG3Q7RTU3 272 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 KLHDC8AQ8IYD2 350 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 SAXO1Q8IYX7 474 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 APH1AQ96BI3 265 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 CXorf40BQ96DE9 158 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 ZBP1Q9H171 429 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 NKX2-4Q9H2Z4 354 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 KCNK15Q9H427 330 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 ELL3Q9HB65 397 aaPredicted RBP8.4□□□□□ -1.07
CLIP1-214ENST00000540539 CDH23Q9H251 3354 aa8.4□□□□□ -1.07
CLIP1-214ENST00000540539 CTSAP10619 480 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 BMP5P22003 454 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 TIA1P31483 386 aaKnown RBP eCLIP8.39□□□□□ -1.07
CLIP1-214ENST00000540539 OR1D2P34982 312 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 PSMB10P40306 273 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 LSSP48449 732 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 PRSS12P56730 875 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 RND3P61587 244 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 RPS13P62277 151 aaKnown RBP8.39□□□□□ -1.07
CLIP1-214ENST00000540539 RHOGP84095 191 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 IL24Q13007 206 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 VAMP3Q15836 100 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 SNAI3Q3KNW1 292 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 SLC8B1Q6J4K2 584 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 OPN5Q6U736 354 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 ZNF679Q8IYX0 411 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 TMEM170AQ8WVE7 144 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 FGF13Q92913 245 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 PRO3102Q9H379 93 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 TMEM30AQ9NV96 361 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 TMEM242Q9NWH2 141 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 WSB2Q9NYS7 404 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-214ENST00000540539 CLN8Q9UBY8 286 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 FUT9Q9Y231 359 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 A0A087WV48 116 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 B4DEV8 164 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 J3KRW8 73 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 CORTO00230 105 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 GALR2O43603 387 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-214ENST00000540539 SLC25A14O95258 325 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-214ENST00000540539 CYB5AP00167 134 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 CHRM2P08172 466 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 FURINP09958 794 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 ZGLP1P0C6A0 271 aa8.39□□□□□ -1.07
CLIP1-214ENST00000540539 CTSSP25774 331 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms