RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ULBP2Q9BZM5 246 aa12.08□□□□□ -0.47
USP42-206ENST00000479544 ZCCHC4Q9H5U6 513 aa12.08□□□□□ -0.47
USP42-206ENST00000479544 C19orf12Q9NSK7 152 aa12.08□□□□□ -0.47
USP42-206ENST00000479544 ZNF727A8MUV8 499 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 TAAR5O14804 337 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 SOX15O60248 233 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 CST4P01036 141 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 EFNA3P52797 238 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 ZNF266Q14584 549 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 JMJD6Q6NYC1 403 aaPredicted RBP12.08□□□□□ -0.48
USP42-206ENST00000479544 C6orf201Q7Z4U5 140 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 RNF128Q8TEB7 428 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 LRRC3BQ96PB8 259 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 METTL9Q9H1A3 318 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 TXNIPQ9H3M7 391 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 KLK13Q9UKR3 277 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 SPTBN1Q01082 2364 aaKnown RBP12.08□□□□□ -0.48
USP42-206ENST00000479544 HSD17B6O14756 317 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 BPNT1O95861 308 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 DRD3P35462 400 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 OR3A4PP47883 348 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 SULT1A1P50225 295 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 GAS1P54826 345 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 RPS16P62249 146 aaKnown RBP12.08□□□□□ -0.48
USP42-206ENST00000479544 MGAT2Q10469 447 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 UBALD1Q8TB05 177 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 C11orf40Q8WZ69 217 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 HLA-CQ95604 372 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 SLC46A1Q96NT5 459 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 LAT2Q9GZY6 243 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 SLC39A9Q9NUM3 307 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 DIDO1Q9BTC0 2240 aaKnown RBP12.08□□□□□ -0.48
USP42-206ENST00000479544 DNAH12Q6ZR08 3092 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 TRBV11-1A0A0K0K1C0 115 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 OR2M5A3KFT3 312 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 C17orf51A8MQB3 221 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 NUDT19A8MXV4 375 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 IL33O95760 270 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 SMIM6P0DI80 62 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 GFERP55789 205 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 PRSS54Q6PEW0 395 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 SLC43A2Q8N370 569 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 ZNF610Q8N9Z0 462 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 ASB5Q8WWX0 329 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 LAMP3Q9UQV4 416 aa12.08□□□□□ -0.48
USP42-206ENST00000479544 RCL1Q9Y2P8 373 aaKnown RBP12.08□□□□□ -0.48
USP42-206ENST00000479544 LCTP09848 1927 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 BTBD17A6NE02 478 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 RER1O15258 196 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 SPRY1O43609 319 aaPredicted RBP12.07□□□□□ -0.48
USP42-206ENST00000479544 PNPP00491 289 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 ZNF121P58317 390 aaPredicted RBP12.07□□□□□ -0.48
USP42-206ENST00000479544 SRSF3P84103 164 aaKnown RBP12.07□□□□□ -0.48
USP42-206ENST00000479544 GUCD1Q96NT3 240 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 SHANK1Q9Y566 2161 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 PLXNB2O15031 1838 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 NRG2O14511 850 aaPredicted RBP12.07□□□□□ -0.48
USP42-206ENST00000479544 TBX6O95947 436 aaPredicted RBP12.07□□□□□ -0.48
USP42-206ENST00000479544 F10P00742 488 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 ACAA2P42765 397 aaKnown RBP12.07□□□□□ -0.48
USP42-206ENST00000479544 RRADP55042 308 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 FOXL2P58012 376 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 TLE4Q04727 773 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 C1orf87Q8N0U7 546 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 RAB39BQ96DA2 213 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 LRFN5Q96NI6 719 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 ZNF816-ZNF321PA0A0X1KG74 233 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 FAM24AA6NFZ4 105 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 DUSP1P28562 367 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 RABIFP47224 123 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 CYB5R2Q6BCY4 276 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 GRINAQ7Z429 371 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 ZNF321PQ8N8H1 164 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 IP6K3Q96PC2 410 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 NBASA2RRP1 2371 aa12.07□□□□□ -0.48
USP42-206ENST00000479544 A0A087X0M5 115 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 A0A1B0GX30 115 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 E5RGE8 158 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 GPR137BO60478 399 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 MMP7P09237 267 aaPredicted RBP12.06□□□□□ -0.48
USP42-206ENST00000479544 MPGP29372 298 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 KIR3DL2P43630 455 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 FHITP49789 147 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 ZNF429Q86V71 674 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 ZDHHC22Q8N966 263 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 LIN37Q96GY3 246 aaPredicted RBP12.06□□□□□ -0.48
USP42-206ENST00000479544 LANCL2Q9NS86 450 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 NSG2Q9Y328 171 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 ARHGEF17Q96PE2 2063 aaPredicted RBP12.06□□□□□ -0.48
USP42-206ENST00000479544 PPP5D1E7EU14 171 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 SFT2D2O95562 160 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 IGKV1D-16P01601 117 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 HNF1AP20823 631 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 MICBQ29980 383 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 GGNBP1Q5YKI7 109 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.06□□□□□ -0.48
USP42-206ENST00000479544 SLC25A42Q86VD7 318 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 SLC38A9Q8NBW4 561 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 TMEM184BQ9Y519 407 aaPredicted RBP12.06□□□□□ -0.48
USP42-206ENST00000479544 WSB1Q9Y6I7 421 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms