RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TBX1O43435 398 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 CYB5R3P00387 301 aaPredicted RBP10.46□□□□□ -0.73
UPF1-203ENST00000594504 OR2T7P0C7T2 308 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 PPIAL4FP0DN26 164 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 HKR1P10072 659 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 GABRB1P18505 474 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 ANOS1P23352 680 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 TNFSF4P23510 183 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 CFL1P23528 166 aaKnown RBP10.46□□□□□ -0.73
UPF1-203ENST00000594504 DCTDP32321 178 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 CD80P33681 288 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 ATP6V1E1P36543 226 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 MTNR1AP48039 350 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 PRSS12P56730 875 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 PSMA6P60900 246 aaKnown RBP10.46□□□□□ -0.73
UPF1-203ENST00000594504 CXCR4P61073 352 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 ZNF92Q03936 586 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 SLC34A1Q06495 639 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 TUSC1Q2TAM9 212 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 TMEM155Q4W5P6 130 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 FAM201AQ5SY85 155 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 ZNF322Q6U7Q0 402 aaPredicted RBP10.46□□□□□ -0.73
UPF1-203ENST00000594504 FAM57BQ71RH2 274 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 SPICQ8N5J4 248 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 OR2T27Q8NH04 317 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 OR2AE1Q8NHA4 323 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 RHOXF1Q8NHV9 184 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 SPSB4Q96A44 273 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 Q96MT0 163 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 APOL4Q9BPW4 351 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 OR10A2Q9H208 303 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 VCXQ9H320 206 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 RNPEPL1Q9HAU8 725 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 GCM1Q9NP62 436 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 IKZF2Q9UKS7 526 aa10.46□□□□□ -0.73
UPF1-203ENST00000594504 POLR3KQ9Y2Y1 108 aaPredicted RBP10.46□□□□□ -0.73
UPF1-203ENST00000594504 DNAJC9-AS1A6NH13 148 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 ACOD1A6NK06 481 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 CD300LBA8K4G0 201 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 CEACAM18A8MTB9 384 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 PRR32B1ATL7 298 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 H0YHG0 523 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 PSMD9O00233 223 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 TMPRSS2O15393 492 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 WNT2P09544 360 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 PRTN3P24158 256 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 MMP16P51512 607 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 RIDAP52758 137 aaKnown RBP10.45□□□□□ -0.74
UPF1-203ENST00000594504 EGR3Q06889 387 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 BAMBIQ13145 260 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 TIGD6Q17RP2 521 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 TTC23Q5W5X9 447 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 RBMS3Q6XE24 437 aaKnown RBP10.45□□□□□ -0.74
UPF1-203ENST00000594504 DOK3Q7L591 496 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 BHLHE23Q8NDY6 225 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 OR10AD1Q8NGE0 317 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 OR13G1Q8NGZ3 307 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 SPRYD4Q8WW59 207 aaPredicted RBP10.45□□□□□ -0.74
UPF1-203ENST00000594504 CYGBQ8WWM9 190 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 PGAM5Q96HS1 289 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 SLC30A2Q9BRI3 323 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 ZNF747Q9BV97 191 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 TTTY10Q9BZA0 68 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 RGCCQ9H4X1 137 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 TMEM165Q9HC07 324 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 BRD7Q9NPI1 651 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 NKX1-2Q9UD57 310 aaPredicted RBP10.45□□□□□ -0.74
UPF1-203ENST00000594504 ZNF391Q9UJN7 358 aa10.45□□□□□ -0.74
UPF1-203ENST00000594504 TMEM269A0A1B0GVZ9 245 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 A0A1B0GWJ7 208 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 A0A1W2PQL4 384 aaPredicted RBP10.44□□□□□ -0.74
UPF1-203ENST00000594504 GGT3PA6NGU5 568 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 F5H5P2 479 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 APOL3O95236 402 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 IGHV4-38-2P0DP08 117 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 DDOSTP39656 456 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 MDH2P40926 338 aaKnown RBP10.44□□□□□ -0.74
UPF1-203ENST00000594504 PMELP40967 661 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 ACTC1P68032 377 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 ACTA1P68133 377 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 PAX8Q06710 450 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 FOXL1Q12952 345 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 ZNF829Q3KNS6 432 aaPredicted RBP10.44□□□□□ -0.74
UPF1-203ENST00000594504 ESCO2Q56NI9 601 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 DHRSXQ8N5I4 330 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 SETD9Q8NE22 299 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 C19orf18Q8NEA5 215 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 OR10H4Q8NGA5 316 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 SGK3Q96BR1 496 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 RNFT2Q96EX2 444 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 REEP6Q96HR9 211 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 MEGF10Q96KG7 1140 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 TBX5Q99593 518 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 MRI1Q9BV20 369 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 MS4A7Q9GZW8 240 aaPredicted RBP10.44□□□□□ -0.74
UPF1-203ENST00000594504 SLC22A4Q9H015 551 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 TMEM100Q9NV29 134 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 FAM206AQ9NX38 181 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 AASSQ9UDR5 926 aa10.44□□□□□ -0.74
UPF1-203ENST00000594504 NOP16Q9Y3C1 178 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms