RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 MZT1Q08AG7 82 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 FLOT2Q14254 428 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 DEFB112Q30KQ8 113 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 GPR157Q5UAW9 335 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 FAM90A1Q86YD7 464 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.97■□□□□ 0.31
SHMT1-209ENST00000582653 OR1M1Q8NGA1 313 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 OR52H1Q8NGJ2 320 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 OTOSQ8NHW6 89 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 SLC7A6OSQ96CW6 309 aaPredicted RBP16.97■□□□□ 0.31
SHMT1-209ENST00000582653 PCGF1Q9BSM1 259 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 SLITRK2Q9H156 845 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 OR10A2Q9H208 303 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 SP140LQ9H930 580 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 ZNF556Q9HAH1 456 aa16.97■□□□□ 0.31
SHMT1-209ENST00000582653 HOXA3O43365 443 aaPredicted RBP16.96■□□□□ 0.31
SHMT1-209ENST00000582653 FKBP6O75344 327 aa16.96■□□□□ 0.31
SHMT1-209ENST00000582653 HMGN1P05114 100 aa16.96■□□□□ 0.31
SHMT1-209ENST00000582653 HCCSP53701 268 aa16.96■□□□□ 0.31
SHMT1-209ENST00000582653 RHOUQ7L0Q8 258 aa16.96■□□□□ 0.31
SHMT1-209ENST00000582653 LRRC29Q8WV35 223 aa16.96■□□□□ 0.31
SHMT1-209ENST00000582653 ZDHHC16Q969W1 377 aa16.96■□□□□ 0.31
SHMT1-209ENST00000582653 TMIGD2Q96BF3 282 aa16.96■□□□□ 0.31
SHMT1-209ENST00000582653 SEH1LQ96EE3 360 aa16.96■□□□□ 0.31
SHMT1-209ENST00000582653 NOX4Q9NPH5 578 aa16.96■□□□□ 0.31
SHMT1-209ENST00000582653 A0A1B0GW55 424 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 SRRM5B3KS81 715 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 ZNF879B4DU55 563 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 P2RY10O00398 339 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DYNC1I1O14576 645 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DVL1O14640 695 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DUX4L2P0CJ85 424 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DUX4L3P0CJ86 424 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DUX4L4P0CJ87 422 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DUX4L5P0CJ88 424 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DUX4L6P0CJ89 424 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DUX4L7P0CJ90 424 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 ANXA8P13928 327 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 C11orf91Q3C1V1 193 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DNAL1Q4LDG9 190 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 TEX36Q5VZQ5 186 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 RUSC1-AS1Q66K80 236 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DUX4L9Q6RFH8 374 aaPredicted RBP16.95■□□□□ 0.3
SHMT1-209ENST00000582653 Q6YL49 198 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 FGFRL1Q8N441 504 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 BCAS4Q8TDM0 211 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 PAPOLGQ9BWT3 736 aaKnown RBP16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DNAJB9Q9UBS3 223 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 DUX4Q9UBX2 424 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 POMPQ9Y244 141 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 MMP24Q9Y5R2 645 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 PKD1L1Q8TDX9 2849 aa16.95■□□□□ 0.3
SHMT1-209ENST00000582653 TCRBV3S1A0A5B6 114 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 PRODHO43272 600 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 TOX4O94842 621 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 MMP9P14780 707 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 SLC2A5P22732 501 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 CFL1P23528 166 aaKnown RBP16.94■□□□□ 0.3
SHMT1-209ENST00000582653 ACKR3P25106 362 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 CFHR2P36980 270 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 GNALP38405 381 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 RPS7P62081 194 aaKnown RBP16.94■□□□□ 0.3
SHMT1-209ENST00000582653 WDR82Q6UXN9 313 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 BTN2A1Q7KYR7 527 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 ZNF454Q8N9F8 522 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 PNLDC1Q8NA58 520 aaKnown RBP16.94■□□□□ 0.3
SHMT1-209ENST00000582653 PAPD5Q8NDF8 572 aaKnown RBP16.94■□□□□ 0.3
SHMT1-209ENST00000582653 FAM71F1Q96KD3 344 aaPredicted RBP16.94■□□□□ 0.3
SHMT1-209ENST00000582653 LYZL4Q96KX0 146 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 TBX15Q96SF7 602 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 CCL13Q99616 98 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 RNPEPL1Q9HAU8 725 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 KIF17Q9P2E2 1029 aa16.94■□□□□ 0.3
SHMT1-209ENST00000582653 MGAM2Q2M2H8 2515 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 CENPVL3A0A0U1RRI6 287 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 ZNF850A8MQ14 1090 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 CDIPTO14735 213 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 MDKP21741 143 aaPredicted RBP16.93■□□□□ 0.3
SHMT1-209ENST00000582653 APOFQ13790 326 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 CSNK2A3Q8NEV1 391 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 ITPKCQ96DU7 683 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 WDFY2Q96P53 400 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 YY1AP1Q9H869 796 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 TNFRSF19Q9NS68 423 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 TVP23BQ9NYZ1 205 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 KAAG1Q9UBP8 84 aa16.93■□□□□ 0.3
SHMT1-209ENST00000582653 A0A1B0GUS0 222 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 FAM181BA6NEQ2 426 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.92■□□□□ 0.3
SHMT1-209ENST00000582653 PSMD9O00233 223 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 DNAJC8O75937 253 aaPredicted RBP16.92■□□□□ 0.3
SHMT1-209ENST00000582653 ECDO95905 644 aaPredicted RBP16.92■□□□□ 0.3
SHMT1-209ENST00000582653 HOXB6P17509 224 aaKnown RBP16.92■□□□□ 0.3
SHMT1-209ENST00000582653 ALOX5APP20292 161 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 GMFBP60983 142 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 ARF6P62330 175 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 PRDX4Q13162 271 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 MICBQ29980 383 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 WDR38Q5JTN6 314 aa16.92■□□□□ 0.3
SHMT1-209ENST00000582653 SLC35D3Q5M8T2 416 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms