RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NHSQ6T4R5 1651 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 NCKAP5O14513 1909 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 H3BNC9 293 aa12.08□□□□□ -0.47
COL6A3-209ENST00000472056 KLK8O60259 260 aa12.08□□□□□ -0.47
COL6A3-209ENST00000472056 GPM6AP51674 278 aa12.08□□□□□ -0.47
COL6A3-209ENST00000472056 FUT6P51993 359 aa12.08□□□□□ -0.47
COL6A3-209ENST00000472056 ERVS71-1P61550 626 aa12.08□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM268Q5VZI3 342 aa12.08□□□□□ -0.47
COL6A3-209ENST00000472056 RXFP4Q8TDU9 374 aa12.08□□□□□ -0.47
COL6A3-209ENST00000472056 RTN4IP1Q8WWV3 396 aaPredicted RBP12.08□□□□□ -0.47
COL6A3-209ENST00000472056 PTGESO14684 152 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF749O43361 778 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 SLC6A1P30531 599 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 PFN3P60673 137 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 SLC35G1Q2M3R5 365 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF761Q86XN6 746 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-209ENST00000472056 ERGIC1Q969X5 290 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 GPR87Q9BY21 358 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 TAS2R4Q9NYW5 299 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 PTPRFP10586 1907 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 HMGN4O00479 90 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 SELENOFO60613 162 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 NQO2P16083 231 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 COX20Q5RI15 118 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 CNEP1R1Q8N9A8 125 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 FZD2Q14332 565 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 METRNLQ641Q3 311 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 TMEM25Q86YD3 366 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 C10orf35Q96D05 121 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 A0A0A6YYC8 382 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-209ENST00000472056 I3L1I5 382 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-209ENST00000472056 COX7A2P2O60397 106 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 C12orf54Q6X4T0 127 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 Q6ZN92 141 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 CD200P41217 278 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 PPP1CAP62136 330 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 AGBL5Q8NDL9 886 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 C20orf27Q9GZN8 174 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 NAT8Q9UHE5 227 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 MED16Q9Y2X0 877 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 PTRH2Q9Y3E5 179 aaKnown RBP12.08□□□□□ -0.48
COL6A3-209ENST00000472056 NRXN3Q9Y4C0 1643 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 PRSS37A4D1T9 235 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 TNFRSF10CO14798 259 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 NHLH1Q02575 133 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 NHLH2Q02577 135 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 OR8G1Q15617 311 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 OR2T6Q8NHC8 308 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 STARD5Q9NSY2 213 aa12.08□□□□□ -0.48
COL6A3-209ENST00000472056 STAG3L3P0CL85 134 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 FOXO1Q12778 655 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 PTDSS2Q9BVG9 487 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 CTSFQ9UBX1 484 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 NAT8BQ9UHF3 227 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 BMPR1BO00238 502 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 BMPR1AP36894 532 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 OR2T10Q8NGZ9 312 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 FGF14Q92915 247 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 TCRBV5S2A0A599 114 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 LNP1A1A4G5 178 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 HIST1H1CP16403 213 aaKnown RBP12.07□□□□□ -0.48
COL6A3-209ENST00000472056 DPTQ07507 201 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 OR2G2Q8NGZ5 317 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 C11orf40Q8WZ69 217 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF552Q9H707 407 aaPredicted RBP12.07□□□□□ -0.48
COL6A3-209ENST00000472056 MTFP1Q9UDX5 166 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 EP300Q09472 2414 aaPredicted RBP12.07□□□□□ -0.48
COL6A3-209ENST00000472056 ABCA4P78363 2273 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 LINC00862A6NCI5 91 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 M0R135 149 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 M0R2Z0 102 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 POLR2IP36954 125 aaKnown RBP12.07□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF547Q8IVP9 402 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF799Q96GE5 643 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 TMEM56Q96MV1 263 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 INHBBP09529 407 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 LAIR1Q6GTX8 287 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 SCD5Q86SK9 330 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 OR8D4Q8NGM9 314 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 FAM3CQ92520 227 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 CXorf65A6NEN9 183 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 APEHP13798 732 aaKnown RBP12.07□□□□□ -0.48
COL6A3-209ENST00000472056 DUSP5Q16690 384 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 LCN15Q6UWW0 184 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 OR10A7Q8NGE5 316 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 PMS2P1A4D2B8 440 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 FGF2P09038 288 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 TBXA2RP21731 343 aa12.07□□□□□ -0.48
COL6A3-209ENST00000472056 ADAT1Q9BUB4 502 aaKnown RBP12.07□□□□□ -0.48
COL6A3-209ENST00000472056 LAMTOR5O43504 91 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 SLC25A4P12235 298 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 SOX4Q06945 474 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF738Q8NE65 137 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 SLAMF6Q96DU3 332 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 MRGPRX4Q96LA9 322 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 ZMAT3Q9HA38 289 aaKnown RBP12.06□□□□□ -0.48
COL6A3-209ENST00000472056 SLC17A4Q9Y2C5 497 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF816-ZNF321PA0A0X1KG74 233 aa12.06□□□□□ -0.48
COL6A3-209ENST00000472056 SH2D7A6NKC9 451 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-209ENST00000472056 FCN1O00602 326 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms