RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TOMM20LQ6UXN7 152 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 CDCA3Q99618 268 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 CD207Q9UJ71 328 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 OLFM2O95897 454 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 GRPP07492 148 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 EN2P19622 333 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 S100A7AQ86SG5 101 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 KLHDC1Q8N7A1 406 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 OR52N4Q8NGI2 321 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 CMTM2Q8TAZ6 248 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 PRDM7Q9NQW5 492 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 COL4A5P29400 1685 aa17.58■□□□□ 0.41
CCDC88B-202ENST00000356786 AQP7O14520 342 aa17.58■□□□□ 0.41
CCDC88B-202ENST00000356786 ARPC3O15145 178 aa17.58■□□□□ 0.41
CCDC88B-202ENST00000356786 VAMP5O95183 116 aa17.58■□□□□ 0.41
CCDC88B-202ENST00000356786 SLC25A4P12235 298 aa17.58■□□□□ 0.41
CCDC88B-202ENST00000356786 STPG2Q8N412 459 aa17.58■□□□□ 0.41
CCDC88B-202ENST00000356786 CCL4L1Q8NHW4 92 aa17.58■□□□□ 0.41
CCDC88B-202ENST00000356786 NAT6Q93015 286 aa17.58■□□□□ 0.41
CCDC88B-202ENST00000356786 ST3GAL6Q9Y274 331 aa17.58■□□□□ 0.41
CCDC88B-202ENST00000356786 TMEM272A0A1B0GTI8 110 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 ARG1P05089 322 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 ZNF121P58317 390 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 TRILQ7L0X0 811 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 DUS4LO95620 317 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 PNPP00491 289 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 DTYMKP23919 212 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 HNRNPA3P51991 378 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 IRF3Q14653 427 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 ZNF77Q15935 545 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 ACOT6Q3I5F7 207 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 ZNF793Q6ZN11 406 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 BHLHA9Q7RTU4 235 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 NUBPLQ8TB37 319 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 TAF1LQ8IZX4 1826 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 A0A1B0GX78 115 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 DVL1O14640 695 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 ALOX12BO75342 701 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 CT45A6P0DMU7 189 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 CT45A5P0DMU8 189 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 CT45A7P0DMV0 189 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 CT45A8P0DMV1 189 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 CT45A9P0DMV2 189 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 RANP62826 216 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 CT45A2Q5DJT8 189 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 VWA2Q5GFL6 755 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 CT45A1Q5HYN5 189 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 AMER3Q8N944 861 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 CT45A3Q8NHU0 189 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 CLCF1Q9UBD9 225 aa17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 COL11A2P13942 1736 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-202ENST00000356786 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 IGF2P01344 180 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 SMIM6P0DI80 62 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 TEX101Q9BY14 249 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 ELF5Q9UKW6 265 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 WNK3Q9BYP7 1800 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 LAMTOR5O43504 91 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 GLRA1P23415 457 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 ADPRHP54922 357 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 RPL7L1Q6DKI1 246 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 PWWP2BQ6NUJ5 590 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 PRSS54Q6PEW0 395 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 SMIM15Q7Z3B0 74 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 FAM210BQ96KR6 192 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 USB1Q9BQ65 265 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 VAMP8Q9BV40 100 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 PARD6AQ9NPB6 346 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 IGLV3-16A0A075B6K0 115 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 A0A1W2PPH5 198 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 CD63P08962 238 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 FAHP16930 419 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 UBE2G1P62253 170 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 SHBQ15464 509 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 INPP5JQ15735 1006 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 SLC25A26Q70HW3 274 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 ARL2-SNX15V9GYD0 113 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 ZNF831Q5JPB2 1677 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 TBX19O60806 448 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 SFT2D2O95562 160 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 DMKNQ6E0U4 476 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 VHLLQ6RSH7 139 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 EID2BQ96D98 161 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 DUSP23Q9BVJ7 150 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 FBXL17Q9UF56 701 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 SSUH2Q9Y2M2 353 aa17.57■□□□□ 0.4
CCDC88B-202ENST00000356786 OR2W5A6NFC9 320 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 ERVH48-1M5A8F1 160 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 FFAR1O14842 300 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 SLC25A1P53007 311 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 ZNF92Q03936 586 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 ST8SIA1Q92185 356 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 KTI12Q96EK9 354 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 SOX7Q9BT81 388 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 ANKRD10Q9NXR5 420 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 hCG_1809904A0A1W2PP81 198 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 A0A1W2PR64 198 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 A0A1W2PRV1 198 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms