RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 FAM206AQ9NX38 181 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 TMEM14AQ9Y6G1 99 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 KIAA1324LA8MWY0 1029 aaPredicted RBP13.29□□□□□ -0.28
CLN3-201ENST00000333496 IFNL4K9M1U5 179 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 NOL3O60936 208 aaKnown RBP13.29□□□□□ -0.28
CLN3-201ENST00000333496 ZNF205O95201 554 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 DCTN2Q13561 401 aaKnown RBP13.29□□□□□ -0.28
CLN3-201ENST00000333496 OR8B8Q15620 311 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 FAM201AQ5SY85 155 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 ZNF691Q5VV52 312 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 ZNF773Q6PK81 442 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 THAP5Q7Z6K1 395 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 CLVS1Q8IUQ0 354 aaPredicted RBP13.29□□□□□ -0.28
CLN3-201ENST00000333496 OR51G2Q8NGK0 314 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 FAM81AQ8TBF8 368 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 TMIGD2Q96BF3 282 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 RGCCQ9H4X1 137 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 UFSP2Q9NUQ7 469 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 HIF1ANQ9NWT6 349 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 ETAA1Q9NY74 926 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 LPAR3Q9UBY5 353 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 WARS2Q9UGM6 360 aaKnown RBP13.29□□□□□ -0.28
CLN3-201ENST00000333496 BLOC1S6Q9UL45 172 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 GMPPBQ9Y5P6 360 aa13.29□□□□□ -0.28
CLN3-201ENST00000333496 TMEM269A0A1B0GVZ9 245 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 PLPP2O43688 288 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 ZNF254O75437 659 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 PNPP00491 289 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 FAM157CP0CG43 387 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 CFL1P23528 166 aaKnown RBP13.28□□□□□ -0.28
CLN3-201ENST00000333496 ACKR3P25106 362 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 DCKP27707 260 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 HTR1FP30939 366 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 DCTDP32321 178 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 GABARAPL2P60520 117 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 CDC42P60953 191 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 HOXA4Q00056 320 aaPredicted RBP13.28□□□□□ -0.28
CLN3-201ENST00000333496 TMEM155Q4W5P6 130 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 ZNF322Q6U7Q0 402 aaPredicted RBP13.28□□□□□ -0.28
CLN3-201ENST00000333496 SSX6Q7RTT6 188 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 GLCCI1Q86VQ1 547 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 SETD9Q8NE22 299 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 OR51F2Q8NH61 342 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 Q8TCH9 128 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 ASB17Q8WXJ9 295 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 PPP1R14AQ96A00 147 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 CLN6Q9NWW5 311 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 NOP16Q9Y3C1 178 aaKnown RBP13.28□□□□□ -0.28
CLN3-201ENST00000333496 ANKRD30BLA7E2S9 258 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 FAM20BO75063 409 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 SRSF10O75494 262 aaKnown RBP13.28□□□□□ -0.28
CLN3-201ENST00000333496 APOL3O95236 402 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 JUNBP17275 347 aaPredicted RBP13.28□□□□□ -0.28
CLN3-201ENST00000333496 KLBQ86Z14 1044 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 TRUB1Q8WWH5 349 aaKnown RBP13.28□□□□□ -0.28
CLN3-201ENST00000333496 ERGIC1Q969X5 290 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 MNTQ99583 582 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 APOL4Q9BPW4 351 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 PATZ1Q9HBE1 687 aaKnown RBP13.28□□□□□ -0.28
CLN3-201ENST00000333496 TMEM165Q9HC07 324 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 G6PC2Q9NQR9 355 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 MRM2Q9UI43 246 aaKnown RBP13.28□□□□□ -0.28
CLN3-201ENST00000333496 IKZF2Q9UKS7 526 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 RHBDD3Q9Y3P4 386 aa13.28□□□□□ -0.28
CLN3-201ENST00000333496 F5H0A9 414 aaPredicted RBP13.27□□□□□ -0.29
CLN3-201ENST00000333496 IGLV3-1P01715 115 aa13.27□□□□□ -0.29
CLN3-201ENST00000333496 MDH2P40926 338 aaKnown RBP13.27□□□□□ -0.29
CLN3-201ENST00000333496 RIDAP52758 137 aaKnown RBP13.27□□□□□ -0.29
CLN3-201ENST00000333496 SEC61A1P61619 476 aaKnown RBP13.27□□□□□ -0.29
CLN3-201ENST00000333496 MFGE8Q08431 387 aaPredicted RBP13.27□□□□□ -0.29
CLN3-201ENST00000333496 PLEKHG7Q6ZR37 379 aa13.27□□□□□ -0.29
CLN3-201ENST00000333496 WDR86Q86TI4 376 aa13.27□□□□□ -0.29
CLN3-201ENST00000333496 KLHL36Q8N4N3 616 aa13.27□□□□□ -0.29
CLN3-201ENST00000333496 SPICQ8N5J4 248 aa13.27□□□□□ -0.29
CLN3-201ENST00000333496 C12orf43Q96C57 262 aaKnown RBP13.27□□□□□ -0.29
CLN3-201ENST00000333496 TBX5Q99593 518 aa13.27□□□□□ -0.29
CLN3-201ENST00000333496 PBOV1Q9GZY1 135 aa13.27□□□□□ -0.29
CLN3-201ENST00000333496 AASSQ9UDR5 926 aa13.27□□□□□ -0.29
CLN3-201ENST00000333496 HSPE1-MOB4S4R3N1 261 aa13.27□□□□□ -0.29
CLN3-201ENST00000333496 FBN1P35555 2871 aaKnown RBP13.27□□□□□ -0.29
CLN3-201ENST00000333496 TRAV20A0A0B4J274 112 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 A0A0U1RQV5 110 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 ACOD1A6NK06 481 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 ZNF670-ZNF695F2Z2N8 137 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 PHYHO14832 338 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 FSTL3O95633 263 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 ZFP36P26651 326 aaKnown RBP13.26□□□□□ -0.29
CLN3-201ENST00000333496 ISL1P61371 349 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 EGR3Q06889 387 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 SLC25A30Q5SVS4 291 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 KCTD8Q6ZWB6 473 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 CROCCP3Q8IVE0 287 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 C1orf87Q8N0U7 546 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 SPERTQ8NA61 448 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 PLPP7Q8NBV4 271 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 C19orf18Q8NEA5 215 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 CSNK2A3Q8NEV1 391 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 TMEM246Q9BRR3 403 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 IMPAD1Q9NX62 359 aa13.26□□□□□ -0.29
CLN3-201ENST00000333496 ZNF391Q9UJN7 358 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms