RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 MRPS27Q92552 414 aaKnown RBP17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 TXNDC16Q9P2K2 825 aa17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 SH3BP5O60239 455 aa17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 GBP1P32455 592 aa17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 C6orf229H3BNL8 230 aa17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 ZSCAN16Q9H4T2 348 aaPredicted RBP17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 ODF2LQ9ULJ1 636 aa17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 CCDC122Q5T0U0 273 aa17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 IFT74Q96LB3 600 aa17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 RRAGDQ9NQL2 400 aaPredicted RBP17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 ZNF408Q9H9D4 720 aa17.27■□□□□ 0.36
PDLIM2-220ENST00000622226 GCKP35557 465 aa17.27■□□□□ 0.35
PDLIM2-220ENST00000622226 MAP2K2P36507 400 aa17.27■□□□□ 0.35
PDLIM2-220ENST00000622226 FMNL3Q8IVF7 1028 aa17.27■□□□□ 0.35
PDLIM2-220ENST00000622226 NKIRAS1Q9NYS0 192 aa17.27■□□□□ 0.35
PDLIM2-220ENST00000622226 RIOK3O14730 519 aaKnown RBP17.27■□□□□ 0.35
PDLIM2-220ENST00000622226 RNF41Q9H4P4 317 aaPredicted RBP17.27■□□□□ 0.35
PDLIM2-220ENST00000622226 AKNAD1Q5T1N1 836 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 LRRC43Q8N309 656 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 EVI5LQ96CN4 794 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 KLF18A0A0U1RQI7 1052 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 FCHSD2O94868 740 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 SETSIPP0DME0 302 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 PEX19P40855 299 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 ASIC1P78348 528 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 FBXO31Q5XUX0 539 aaPredicted RBP17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 MICAL1Q8TDZ2 1067 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 MTRF1LQ9UGC7 380 aaKnown RBP17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 TSPY2A6NKD2 308 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 ELF2Q15723 593 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 PFDN4Q9NQP4 134 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 TTC21AQ8NDW8 1320 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 ALG1Q9BT22 464 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 ATP6V0A2Q9Y487 856 aa17.26■□□□□ 0.35
PDLIM2-220ENST00000622226 GNAT3A8MTJ3 354 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 MORC4Q8TE76 937 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 BAIAP2L1Q9UHR4 511 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 GSDMBQ8TAX9 411 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 RTL1A6NKG5 1358 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 GEN1Q17RS7 908 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 GMNNO75496 209 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 SATB1Q01826 763 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 KAT14Q9H8E8 782 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 FRMD3A2A2Y4 597 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 GOLGA6CA6NDK9 693 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 GOLGA6DP0CG33 693 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 PRPHP41219 470 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 NUF2Q9BZD4 464 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 GOLGA6AQ9NYA3 693 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 RPGRIP1LQ68CZ1 1315 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 SDCCAG8Q86SQ7 713 aaPredicted RBP17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 FAM169AQ9Y6X4 670 aa17.25■□□□□ 0.35
PDLIM2-220ENST00000622226 RFC4P35249 363 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 TRIM68Q6AZZ1 485 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 PYM1Q9BRP8 204 aaKnown RBP17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 STK38LQ9Y2H1 464 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 F8W031 263 aaPredicted RBP17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 PSMA7O14818 248 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 TSNAXIP1Q2TAA8 658 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 CERS3Q8IU89 383 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 LMBR1Q8WVP7 490 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 TRIM27P14373 513 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 ALDH3A1P30838 453 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 MCUR1Q96AQ8 359 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 BANK1Q8NDB2 785 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 POTEDQ86YR6 584 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 VPS52Q8N1B4 723 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 KCNG4Q8TDN1 519 aa17.24■□□□□ 0.35
PDLIM2-220ENST00000622226 RTEL1-TNFRSF6BF6WH68 1400 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 TOM1O60784 492 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 IFIT5Q13325 482 aaKnown RBP17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 TTC22Q5TAA0 569 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 BIN2Q9UBW5 565 aaPredicted RBP17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 EXOC5O00471 708 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 UTP14CQ5TAP6 766 aaKnown RBP17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 MFSD6Q6ZSS7 791 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 CCDC65Q8IXS2 484 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 NCOA7Q8NI08 942 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 RABGAP1Q9Y3P9 1069 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 MCM7P33993 719 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 CCDC38Q502W7 563 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 BMP2KLQ5H9B9 411 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 PPP1R21Q6ZMI0 780 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 CARD6Q9BX69 1037 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 TNNC1P63316 161 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 CALCOCO2Q13137 446 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 TPX2Q9ULW0 747 aaKnown RBP17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 F13A1P00488 732 aa17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 RNF168Q8IYW5 571 aaPredicted RBP17.23■□□□□ 0.35
PDLIM2-220ENST00000622226 SMARCA4P51532 1647 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 STARD3NLO95772 234 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 VSIG1Q86XK7 387 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 TRIM31Q9BZY9 425 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 SPAG1Q07617 926 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 ERO1AQ96HE7 468 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 EHMT1Q9H9B1 1298 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 NEK11Q8NG66 645 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 JARID2Q92833 1246 aaPredicted RBP17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 ECHDC1Q9NTX5 307 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 SNAPC4Q5SXM2 1469 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms