RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SLU7O95391 586 aaKnown RBP16.01■□□□□ 0.15
CPSF1-212ENST00000616140 STAT6P42226 847 aa16.01■□□□□ 0.15
CPSF1-212ENST00000616140 MCM6Q14566 821 aa16.01■□□□□ 0.15
CPSF1-212ENST00000616140 NAA16Q6N069 864 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-212ENST00000616140 RMND1Q9NWS8 449 aa16.01■□□□□ 0.15
CPSF1-212ENST00000616140 PRPF4BQ13523 1007 aaKnown RBP16.01■□□□□ 0.15
CPSF1-212ENST00000616140 ZRSR2Q15696 482 aaKnown RBP16.01■□□□□ 0.15
CPSF1-212ENST00000616140 ZMYM4Q5VZL5 1548 aa16.01■□□□□ 0.15
CPSF1-212ENST00000616140 SGSM2O43147 1006 aa16.01■□□□□ 0.15
CPSF1-212ENST00000616140 NBPF6Q5VWK0 638 aa16.01■□□□□ 0.15
CPSF1-212ENST00000616140 CTR9Q6PD62 1173 aa16.01■□□□□ 0.15
CPSF1-212ENST00000616140 NBPF5PQ86XG9 351 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-212ENST00000616140 NBPF4Q96M43 638 aa16.01■□□□□ 0.15
CPSF1-212ENST00000616140 GOPCQ9HD26 462 aa16.01■□□□□ 0.15
CPSF1-212ENST00000616140 EXOC1Q9NV70 894 aa16.01■□□□□ 0.15
CPSF1-212ENST00000616140 ZNF219Q9P2Y4 722 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-212ENST00000616140 A0A1B0GVL5 298 aa16■□□□□ 0.15
CPSF1-212ENST00000616140 CTAGE1Q96RT6 745 aa16■□□□□ 0.15
CPSF1-212ENST00000616140 KCNA6P17658 529 aa16■□□□□ 0.15
CPSF1-212ENST00000616140 STX17P56962 302 aa16■□□□□ 0.15
CPSF1-212ENST00000616140 SF3B2Q13435 895 aaKnown RBP16■□□□□ 0.15
CPSF1-212ENST00000616140 ZMYND15Q9H091 742 aa16■□□□□ 0.15
CPSF1-212ENST00000616140 PSMA7O14818 248 aa16■□□□□ 0.15
CPSF1-212ENST00000616140 RNMTO43148 476 aaKnown RBP16■□□□□ 0.15
CPSF1-212ENST00000616140 CFAP43Q8NDM7 1665 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 CETN1Q12798 172 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 MIGA1Q8NAN2 632 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 SPAG5Q96R06 1193 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.99■□□□□ 0.151e-7■■□□□ 13.8
CPSF1-212ENST00000616140 CCDC129Q6ZRS4 1044 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 DBNDD2Q9BQY9 259 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 SNX14Q9Y5W7 946 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 TSPY3P0CV98 308 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 TSPY8P0CW00 308 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 EHBP1Q8NDI1 1231 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 CTNNBL1Q8WYA6 563 aaPredicted RBP15.99■□□□□ 0.15
CPSF1-212ENST00000616140 IP6K1Q92551 441 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 FAM227BQ96M60 508 aa15.99■□□□□ 0.15
CPSF1-212ENST00000616140 NIP7Q9Y221 180 aaKnown RBP eCLIP15.99■□□□□ 0.15
CPSF1-212ENST00000616140 CTAGE15A4D2H0 777 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 CTAGE8P0CG41 777 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 CYLC1P35663 651 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-212ENST00000616140 CTAGE6Q86UF2 777 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 CTAGE4Q8IX94 777 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 DRC1Q96MC2 740 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 KIAA0556O60303 1618 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 ABCC10Q5T3U5 1492 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 GBP2P32456 591 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-212ENST00000616140 HEATR3Q7Z4Q2 680 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 BRAPQ7Z569 592 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 DCAF5Q96JK2 942 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 CCDC175P0C221 793 aa15.98■□□□□ 0.15
CPSF1-212ENST00000616140 MAP2K1Q02750 393 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-212ENST00000616140 WDR7Q9Y4E6 1490 aa15.97■□□□□ 0.15
CPSF1-212ENST00000616140 IBSPP21815 317 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-212ENST00000616140 GNAQP50148 359 aa15.97■□□□□ 0.15
CPSF1-212ENST00000616140 ASIC1P78348 528 aa15.97■□□□□ 0.15
CPSF1-212ENST00000616140 NLRP3Q96P20 1036 aa15.97■□□□□ 0.15
CPSF1-212ENST00000616140 RPS6KB1P23443 525 aa15.97■□□□□ 0.15
CPSF1-212ENST00000616140 IRS4O14654 1257 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-212ENST00000616140 EZRP15311 586 aaKnown RBP15.97■□□□□ 0.15
CPSF1-212ENST00000616140 RNF187Q5TA31 235 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-212ENST00000616140 ACSBG1Q96GR2 724 aa15.97■□□□□ 0.15
CPSF1-212ENST00000616140 SLC27A2O14975 620 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 FAM160A1Q05DH4 1040 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 PTPRTO14522 1441 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 SYT10Q6XYQ8 523 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 MAGEB6Q8N7X4 407 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 LGR6Q9HBX8 967 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 NCOA5Q9HCD5 579 aaKnown RBP15.96■□□□□ 0.15
CPSF1-212ENST00000616140 BLMP54132 1417 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-212ENST00000616140 USP19O94966 1318 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 A0A1B0GUL7 405 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 HLA-DOAP06340 250 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 ATP6V1AP38606 617 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 ZNF790Q6PG37 636 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 MAATS1Q7Z4T9 603 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 FAM89AQ96GI7 184 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 FEZ1Q99689 392 aa15.96■□□□□ 0.15
CPSF1-212ENST00000616140 DESP17661 470 aa15.96■□□□□ 0.14
CPSF1-212ENST00000616140 ZNF445P59923 1031 aa15.96■□□□□ 0.14
CPSF1-212ENST00000616140 DZIP3Q86Y13 1208 aaKnown RBP15.96■□□□□ 0.14
CPSF1-212ENST00000616140 FAM107BQ9H098 131 aa15.96■□□□□ 0.14
CPSF1-212ENST00000616140 LZTFL1Q9NQ48 299 aa15.96■□□□□ 0.14
CPSF1-212ENST00000616140 CTTNBP2Q8WZ74 1663 aa15.95■□□□□ 0.14
CPSF1-212ENST00000616140 RFC4P35249 363 aa15.95■□□□□ 0.14
CPSF1-212ENST00000616140 KARSQ15046 597 aaKnown RBP15.95■□□□□ 0.14
CPSF1-212ENST00000616140 SIRT1Q96EB6 747 aa15.95■□□□□ 0.14
CPSF1-212ENST00000616140 SRRTQ9BXP5 876 aaKnown RBP15.95■□□□□ 0.14
CPSF1-212ENST00000616140 LMBRD1Q9NUN5 540 aa15.95■□□□□ 0.14
CPSF1-212ENST00000616140 SYCP3Q8IZU3 236 aa15.95■□□□□ 0.14
CPSF1-212ENST00000616140 ZBTB9Q96C00 473 aa15.95■□□□□ 0.14
CPSF1-212ENST00000616140 LRRC27Q9C0I9 530 aa15.95■□□□□ 0.14
CPSF1-212ENST00000616140 MMRN2Q9H8L6 949 aa15.95■□□□□ 0.14
CPSF1-212ENST00000616140 DNMT1P26358 1616 aaKnown RBP15.95■□□□□ 0.14
CPSF1-212ENST00000616140 EYA2O00167 538 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 IGSF3O75054 1194 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 IL2RBP14784 551 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 NAPAP54920 295 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 ZKSCAN3Q9BRR0 538 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms