RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 ZBTB3Q9H5J0 574 aa20.01■□□□□ 0.79
VPS53-215ENST00000573028 KDM6AO15550 1401 aaPredicted RBP20.01■□□□□ 0.79
VPS53-215ENST00000573028 IFIT1P09914 478 aaKnown RBP20.01■□□□□ 0.79
VPS53-215ENST00000573028 SKILP12757 684 aa20.01■□□□□ 0.79
VPS53-215ENST00000573028 ZRSR1Q15695 479 aaKnown RBP20.01■□□□□ 0.79
VPS53-215ENST00000573028 ZNF396Q96N95 335 aaPredicted RBP20.01■□□□□ 0.79
VPS53-215ENST00000573028 RCOR1Q9UKL0 485 aa20.01■□□□□ 0.79
VPS53-215ENST00000573028 HMGB1P09429 215 aaKnown RBP20■□□□□ 0.79
VPS53-215ENST00000573028 HSPD1P10809 573 aaKnown RBP20■□□□□ 0.79
VPS53-215ENST00000573028 NCBP1Q09161 790 aaKnown RBP20■□□□□ 0.79
VPS53-215ENST00000573028 WASHC4Q2M389 1173 aa20■□□□□ 0.79
VPS53-215ENST00000573028 LRRC8AQ8IWT6 810 aa20■□□□□ 0.79
VPS53-215ENST00000573028 BIN1O00499 593 aa20■□□□□ 0.79
VPS53-215ENST00000573028 RABL6Q3YEC7 729 aaPredicted RBP20■□□□□ 0.79
VPS53-215ENST00000573028 GORABQ5T7V8 394 aa20■□□□□ 0.79
VPS53-215ENST00000573028 CEP135Q66GS9 1140 aa20■□□□□ 0.79
VPS53-215ENST00000573028 NAA16Q6N069 864 aaPredicted RBP20■□□□□ 0.79
VPS53-215ENST00000573028 TTLL7Q6ZT98 887 aa20■□□□□ 0.79
VPS53-215ENST00000573028 GJB4Q9NTQ9 266 aa20■□□□□ 0.79
VPS53-215ENST00000573028 SMTNL1A8MU46 457 aa19.99■□□□□ 0.79
VPS53-215ENST00000573028 PROSER2Q86WR7 435 aaPredicted RBP19.99■□□□□ 0.79
VPS53-215ENST00000573028 LLPHQ9BRT6 129 aaKnown RBP19.99■□□□□ 0.79
VPS53-215ENST00000573028 CYP27B1O15528 508 aa19.99■□□□□ 0.79
VPS53-215ENST00000573028 PDIA3P30101 505 aaKnown RBP19.99■□□□□ 0.79
VPS53-215ENST00000573028 SNW1Q13573 536 aaKnown RBP19.99■□□□□ 0.79
VPS53-215ENST00000573028 CCDC69A6NI79 296 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 ZSCAN20P17040 1043 aaPredicted RBP19.98■□□□□ 0.79
VPS53-215ENST00000573028 FAM160A1Q05DH4 1040 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 LRP10Q7Z4F1 713 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 ANO10Q9NW15 660 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 CHD2O14647 1828 aaKnown RBP19.98■□□□□ 0.79
VPS53-215ENST00000573028 CTIFO43310 598 aaKnown RBP19.98■□□□□ 0.79
VPS53-215ENST00000573028 ANKRD7Q92527 254 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 NPHP1O15259 732 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 CTAGE5O15320 804 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 STK38Q15208 465 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 ISM2Q6H9L7 571 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 CEP57L1Q8IYX8 460 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 PUS3Q9BZE2 481 aaKnown RBP19.98■□□□□ 0.79
VPS53-215ENST00000573028 MAST3O60307 1309 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 OVOS2A0A0G2JMS6 1433 aa19.98■□□□□ 0.79
VPS53-215ENST00000573028 USP54Q70EL1 1684 aa19.97■□□□□ 0.79
VPS53-215ENST00000573028 ATG9AQ7Z3C6 839 aa19.97■□□□□ 0.79
VPS53-215ENST00000573028 SYTL4Q96C24 671 aaPredicted RBP19.97■□□□□ 0.79
VPS53-215ENST00000573028 FER1L4A9Z1Z3 1794 aa19.97■□□□□ 0.79
VPS53-215ENST00000573028 PLBD2Q8NHP8 589 aa19.97■□□□□ 0.79
VPS53-215ENST00000573028 PCDHA7Q9UN72 937 aa19.97■□□□□ 0.79
VPS53-215ENST00000573028 SH3TC1Q8TE82 1336 aa19.97■□□□□ 0.79
VPS53-215ENST00000573028 A0A1B0GUL7 405 aa19.97■□□□□ 0.79
VPS53-215ENST00000573028 CAVIN2O95810 425 aa19.97■□□□□ 0.79
VPS53-215ENST00000573028 M0R2C6 588 aa19.96■□□□□ 0.79
VPS53-215ENST00000573028 EXOSC10Q01780 885 aaKnown RBP19.96■□□□□ 0.79
VPS53-215ENST00000573028 PTPN14Q15678 1187 aa19.96■□□□□ 0.79
VPS53-215ENST00000573028 HELLSQ9NRZ9 838 aa19.96■□□□□ 0.79
VPS53-215ENST00000573028 SMC2O95347 1197 aa19.96■□□□□ 0.79
VPS53-215ENST00000573028 A1BGP04217 495 aa19.96■□□□□ 0.79
VPS53-215ENST00000573028 FOXO4P98177 505 aa19.96■□□□□ 0.79
VPS53-215ENST00000573028 ZMYM1Q5SVZ6 1142 aa19.96■□□□□ 0.79
VPS53-215ENST00000573028 ILDR1Q86SU0 546 aaPredicted RBP19.96■□□□□ 0.79
VPS53-215ENST00000573028 DHX40Q8IX18 779 aaKnown RBP19.96■□□□□ 0.79
VPS53-215ENST00000573028 DCAF5Q96JK2 942 aa19.95■□□□□ 0.78
VPS53-215ENST00000573028 DSCC1Q9BVC3 393 aa19.95■□□□□ 0.78
VPS53-215ENST00000573028 RNF113AO15541 343 aaKnown RBP19.95■□□□□ 0.78
VPS53-215ENST00000573028 NDUFA8P51970 172 aa19.95■□□□□ 0.78
VPS53-215ENST00000573028 MRPS27Q92552 414 aaKnown RBP19.95■□□□□ 0.78
VPS53-215ENST00000573028 CWC25Q9NXE8 425 aaPredicted RBP19.95■□□□□ 0.78
VPS53-215ENST00000573028 CLIC4Q9Y696 253 aa19.95■□□□□ 0.78
VPS53-215ENST00000573028 OSBP2Q969R2 916 aa19.95■□□□□ 0.78
VPS53-215ENST00000573028 MRFAP1L1Q96HT8 127 aa19.95■□□□□ 0.78
VPS53-215ENST00000573028 PAXBP1Q9Y5B6 917 aa19.95■□□□□ 0.78
VPS53-215ENST00000573028 CARMIL3Q8ND23 1372 aa19.94■□□□□ 0.78
VPS53-215ENST00000573028 NBPF26B4DH59 902 aa19.94■□□□□ 0.78
VPS53-215ENST00000573028 CASP7P55210 303 aa19.94■□□□□ 0.78
VPS53-215ENST00000573028 NBPF14Q5TI25 921 aa19.94■□□□□ 0.78
VPS53-215ENST00000573028 NBPF10Q6P3W6 841 aaKnown RBP19.94■□□□□ 0.78
VPS53-215ENST00000573028 NBPF15Q8N660 670 aa19.94■□□□□ 0.78
VPS53-215ENST00000573028 ENGASEQ8NFI3 743 aa19.94■□□□□ 0.78
VPS53-215ENST00000573028 C8orf76Q96K31 380 aa19.94■□□□□ 0.78
VPS53-215ENST00000573028 CPLX1O14810 134 aa19.94■□□□□ 0.78
VPS53-215ENST00000573028 FDPSP14324 419 aaKnown RBP19.94■□□□□ 0.78
VPS53-215ENST00000573028 TRHP20396 242 aaPredicted RBP19.94■□□□□ 0.78
VPS53-215ENST00000573028 DMTNQ08495 405 aa19.94■□□□□ 0.78
VPS53-215ENST00000573028 KLF18A0A0U1RQI7 1052 aa19.93■□□□□ 0.78
VPS53-215ENST00000573028 GOLGA8BA8MQT2 603 aa19.93■□□□□ 0.78
VPS53-215ENST00000573028 IL15P40933 162 aaPredicted RBP19.93■□□□□ 0.78
VPS53-215ENST00000573028 DPCR1Q3MIW9 517 aa19.93■□□□□ 0.78
VPS53-215ENST00000573028 SARM1Q6SZW1 724 aa19.93■□□□□ 0.78
VPS53-215ENST00000573028 NAT10Q9H0A0 1025 aaKnown RBP19.93■□□□□ 0.78
VPS53-215ENST00000573028 MEGF6O75095 1541 aa19.93■□□□□ 0.78
VPS53-215ENST00000573028 CDC25BP30305 580 aa19.93■□□□□ 0.78
VPS53-215ENST00000573028 ORC3Q9UBD5 711 aaPredicted RBP19.93■□□□□ 0.78
VPS53-215ENST00000573028 EYA2O00167 538 aa19.92■□□□□ 0.78
VPS53-215ENST00000573028 CEP126Q9P2H0 1117 aa19.92■□□□□ 0.78
VPS53-215ENST00000573028 ZNF215Q9UL58 517 aaPredicted RBP19.92■□□□□ 0.78
VPS53-215ENST00000573028 C5P01031 1676 aa19.92■□□□□ 0.78
VPS53-215ENST00000573028 ADORA1P30542 326 aa19.92■□□□□ 0.78
VPS53-215ENST00000573028 TTC39AQ5SRH9 613 aa19.91■□□□□ 0.78
VPS53-215ENST00000573028 PI16Q6UXB8 463 aa19.91■□□□□ 0.78
VPS53-215ENST00000573028 MRC1P22897 1456 aa19.91■□□□□ 0.78
VPS53-215ENST00000573028 H7C1W4 665 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms