RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	TMC4	Q7Z404	712 aa		11.36	□□□□□ -0.59
SYNE2-222	ENST00000556725	RASAL3	Q86YV0	1011 aa		11.36	□□□□□ -0.59
SYNE2-222	ENST00000556725	SULF1	Q8IWU6	871 aa		11.36	□□□□□ -0.59
SYNE2-222	ENST00000556725	FAM89A	Q96GI7	184 aa		11.36	□□□□□ -0.59
SYNE2-222	ENST00000556725	OCEL1	Q9H607	264 aa		11.36	□□□□□ -0.59
SYNE2-222	ENST00000556725	ATP5J2-PTCD1	G3V325	749 aa		11.35	□□□□□ -0.59
SYNE2-222	ENST00000556725	TBC1D8	O95759	1140 aa		11.35	□□□□□ -0.59
SYNE2-222	ENST00000556725	SCARF1	Q14162	830 aa		11.35	□□□□□ -0.59
SYNE2-222	ENST00000556725	SF3B3	Q15393	1217 aa	Known RBP	11.35	□□□□□ -0.59
SYNE2-222	ENST00000556725	TBC1D16	Q8TBP0	767 aa		11.35	□□□□□ -0.59
SYNE2-222	ENST00000556725	RIPK4	P57078	832 aa		11.34	□□□□□ -0.59
SYNE2-222	ENST00000556725	ANGEL2	Q5VTE6	544 aa	Known RBP	11.34	□□□□□ -0.59
SYNE2-222	ENST00000556725	PRAMEF18	Q5VWM3	479 aa		11.34	□□□□□ -0.59
SYNE2-222	ENST00000556725	ISCA1	Q9BUE6	129 aa		11.34	□□□□□ -0.59
SYNE2-222	ENST00000556725	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.34	□□□□□ -0.59
SYNE2-222	ENST00000556725	UBE2Q2L	H0YL09	131 aa		11.33	□□□□□ -0.6
SYNE2-222	ENST00000556725	VASP	P50552	380 aa	Predicted RBP	11.33	□□□□□ -0.6
SYNE2-222	ENST00000556725	RPS8	P62241	208 aa	Known RBP	11.33	□□□□□ -0.6
SYNE2-222	ENST00000556725	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.33	□□□□□ -0.6
SYNE2-222	ENST00000556725	MARVELD3	Q96A59	401 aa		11.33	□□□□□ -0.6
SYNE2-222	ENST00000556725	EYA3	Q99504	573 aa		11.33	□□□□□ -0.6
SYNE2-222	ENST00000556725	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.33	□□□□□ -0.6
SYNE2-222	ENST00000556725	CHPF2	Q9P2E5	772 aa		11.33	□□□□□ -0.6
SYNE2-222	ENST00000556725	MAPK8IP3	Q9UPT6	1336 aa		11.33	□□□□□ -0.6
SYNE2-222	ENST00000556725	ZNF280A	P59817	542 aa	Predicted RBP	11.32	□□□□□ -0.6
SYNE2-222	ENST00000556725	ANKRD13D	Q6ZTN6	518 aa		11.32	□□□□□ -0.6
SYNE2-222	ENST00000556725	SEC31B	Q9NQW1	1179 aa		11.32	□□□□□ -0.6
SYNE2-222	ENST00000556725	HDAC9	Q9UKV0	1011 aa		11.32	□□□□□ -0.6
SYNE2-222	ENST00000556725	MKI67	P46013	3256 aa	Known RBP	11.32	□□□□□ -0.6
SYNE2-222	ENST00000556725		G3V3G9	751 aa		11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	IRS4	O14654	1257 aa	Predicted RBP	11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	UFL1	O94874	794 aa		11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	TMPO	P42166	694 aa	Known RBP	11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	DCAF8	Q5TAQ9	597 aa		11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	PLCD3	Q8N3E9	789 aa		11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	PLBD2	Q8NHP8	589 aa		11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	GML	Q99445	158 aa		11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	R3HDML	Q9H3Y0	253 aa		11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	BABAM1	Q9NWV8	329 aa		11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	PODXL2	Q9NZ53	605 aa		11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.31	□□□□□ -0.6
SYNE2-222	ENST00000556725	WTIP	A6NIX2	430 aa	Predicted RBP	11.3	□□□□□ -0.6
SYNE2-222	ENST00000556725	MKRN3	Q13064	507 aa	Known RBP	11.3	□□□□□ -0.6
SYNE2-222	ENST00000556725	PKN2	Q16513	984 aa	Known RBP	11.3	□□□□□ -0.6
SYNE2-222	ENST00000556725	AGBL3	Q8NEM8	1001 aa		11.3	□□□□□ -0.6
SYNE2-222	ENST00000556725	FAM212A	Q96EL1	285 aa		11.3	□□□□□ -0.6
SYNE2-222	ENST00000556725	PNN	Q9H307	717 aa	Known RBP	11.3	□□□□□ -0.6
SYNE2-222	ENST00000556725	MYOZ2	Q9NPC6	264 aa		11.3	□□□□□ -0.6
SYNE2-222	ENST00000556725	ANKIB1	Q9P2G1	1089 aa		11.3	□□□□□ -0.6
SYNE2-222	ENST00000556725	PAPPA2	Q9BXP8	1791 aa		11.29	□□□□□ -0.6
SYNE2-222	ENST00000556725	GPR25	O00155	361 aa		11.29	□□□□□ -0.6
SYNE2-222	ENST00000556725	CHL1	O00533	1208 aa		11.29	□□□□□ -0.6
SYNE2-222	ENST00000556725	TM4SF4	P48230	202 aa		11.29	□□□□□ -0.6
SYNE2-222	ENST00000556725	FKBP1B	P68106	108 aa		11.29	□□□□□ -0.6
SYNE2-222	ENST00000556725	NEUROD2	Q15784	382 aa		11.29	□□□□□ -0.6
SYNE2-222	ENST00000556725	NBPF9	Q3BBW0	867 aa		11.29	□□□□□ -0.6
SYNE2-222	ENST00000556725	JARID2	Q92833	1246 aa	Predicted RBP	11.29	□□□□□ -0.6
SYNE2-222	ENST00000556725	GGA1	Q9UJY5	639 aa		11.29	□□□□□ -0.6
SYNE2-222	ENST00000556725	LAS1L	Q9Y4W2	734 aa	Known RBP	11.29	□□□□□ -0.6
SYNE2-222	ENST00000556725	HTT	P42858	3142 aa		11.28	□□□□□ -0.6
SYNE2-222	ENST00000556725	USP17L8	P0C7I0	530 aa		11.28	□□□□□ -0.6
SYNE2-222	ENST00000556725	HDGFL1	Q5TGJ6	251 aa		11.28	□□□□□ -0.6
SYNE2-222	ENST00000556725	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.28	□□□□□ -0.6
SYNE2-222	ENST00000556725	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.28	□□□□□ -0.6
SYNE2-222	ENST00000556725	MXD3	Q9BW11	206 aa		11.28	□□□□□ -0.6
SYNE2-222	ENST00000556725	CENPF	P49454	3210 aa		11.28	□□□□□ -0.6
SYNE2-222	ENST00000556725	PITPNM2	Q9BZ72	1349 aa		11.28	□□□□□ -0.6
SYNE2-222	ENST00000556725	PSME4	Q14997	1843 aa		11.28	□□□□□ -0.6
SYNE2-222	ENST00000556725	TRIM28	Q13263	835 aa	Known RBP	11.27	□□□□□ -0.61
SYNE2-222	ENST00000556725	TTLL12	Q14166	644 aa	Predicted RBP	11.27	□□□□□ -0.61
SYNE2-222	ENST00000556725	USP17L3	A6NCW0	530 aa		11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	USP17L4	A6NCW7	530 aa		11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	FKTN	O75072	461 aa		11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	PTPN12	Q05209	780 aa	Known RBP	11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	PRKG1	Q13976	671 aa		11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	USP17L1	Q7RTZ2	530 aa		11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	CCDC146	Q8IYE0	955 aa		11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	DBF4	Q9UBU7	674 aa	Predicted RBP	11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	FZD1	Q9UP38	647 aa		11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	ZNF609	O15014	1411 aa		11.26	□□□□□ -0.61
SYNE2-222	ENST00000556725	WNT10B	O00744	389 aa		11.25	□□□□□ -0.61
SYNE2-222	ENST00000556725	LMOD3	Q0VAK6	560 aa		11.25	□□□□□ -0.61
SYNE2-222	ENST00000556725	NOM1	Q5C9Z4	860 aa	Known RBP	11.25	□□□□□ -0.61
SYNE2-222	ENST00000556725	HABP4	Q5JVS0	413 aa	Known RBP	11.25	□□□□□ -0.61
SYNE2-222	ENST00000556725	PHAX	Q9H814	394 aa	Known RBP	11.25	□□□□□ -0.61
SYNE2-222	ENST00000556725	CCDC152	Q4G0S7	254 aa		11.24	□□□□□ -0.61
SYNE2-222	ENST00000556725	DACT2	Q5SW24	774 aa		11.24	□□□□□ -0.61
SYNE2-222	ENST00000556725	DUSP27	Q5VZP5	1158 aa		11.24	□□□□□ -0.61
SYNE2-222	ENST00000556725	RIC3	Q7Z5B4	369 aa		11.24	□□□□□ -0.61
SYNE2-222	ENST00000556725	PODN	Q7Z5L7	613 aa		11.24	□□□□□ -0.61
SYNE2-222	ENST00000556725	MYD88	Q99836	296 aa		11.24	□□□□□ -0.61
SYNE2-222	ENST00000556725	KRTAP3-3	Q9BYR6	98 aa		11.24	□□□□□ -0.61
SYNE2-222	ENST00000556725	KRTAP3-2	Q9BYR7	98 aa		11.24	□□□□□ -0.61
SYNE2-222	ENST00000556725	HYPK	Q9NX55	129 aa		11.24	□□□□□ -0.61
SYNE2-222	ENST00000556725	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.24	□□□□□ -0.61
SYNE2-222	ENST00000556725	PDE8A	O60658	829 aa		11.23	□□□□□ -0.61
SYNE2-222	ENST00000556725	ATP2B4	P23634	1241 aa		11.23	□□□□□ -0.61
SYNE2-222	ENST00000556725	SPRYD7	Q5W111	196 aa		11.23	□□□□□ -0.61

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