RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 SCNN1DP51172 638 aa28.32■■■□□ 2.12
SFSWAP-204ENST00000535399 PODNQ7Z5L7 613 aa28.32■■■□□ 2.12
SFSWAP-204ENST00000535399 SIL1Q9H173 461 aa28.32■■■□□ 2.12
SFSWAP-204ENST00000535399 TAF1DQ9H5J8 278 aaPredicted RBP28.31■■■□□ 2.12
SFSWAP-204ENST00000535399 A0A1B0GUL6 1792 aa28.3■■■□□ 2.12
SFSWAP-204ENST00000535399 PDE8BO95263 885 aa28.3■■■□□ 2.12
SFSWAP-204ENST00000535399 GMPSP49915 693 aaPredicted RBP28.3■■■□□ 2.12
SFSWAP-204ENST00000535399 C16orf71Q8IYS4 520 aaPredicted RBP28.3■■■□□ 2.12
SFSWAP-204ENST00000535399 HACL1Q9UJ83 578 aa28.3■■■□□ 2.12
SFSWAP-204ENST00000535399 DDX19BQ9UMR2 479 aa28.3■■■□□ 2.12
SFSWAP-204ENST00000535399 TOMM70O94826 608 aa28.29■■■□□ 2.12
SFSWAP-204ENST00000535399 VIL1P09327 827 aaKnown RBP28.29■■■□□ 2.12
SFSWAP-204ENST00000535399 ATP8B2P98198 1209 aa28.29■■■□□ 2.12
SFSWAP-204ENST00000535399 ZBTB12Q9Y330 459 aaPredicted RBP28.28■■■□□ 2.12
SFSWAP-204ENST00000535399 EPHX2P34913 555 aa28.27■■■□□ 2.12
SFSWAP-204ENST00000535399 IL15P40933 162 aaPredicted RBP28.27■■■□□ 2.12
SFSWAP-204ENST00000535399 EPS15P42566 896 aa28.27■■■□□ 2.12
SFSWAP-204ENST00000535399 C1QTNF8P60827 252 aa28.27■■■□□ 2.12
SFSWAP-204ENST00000535399 POLA2Q14181 598 aa28.27■■■□□ 2.12
SFSWAP-204ENST00000535399 RBM46Q8TBY0 533 aaKnown RBP28.27■■■□□ 2.12
SFSWAP-204ENST00000535399 CD209Q9NNX6 404 aa28.27■■■□□ 2.12
SFSWAP-204ENST00000535399 GPRC5DQ9NZD1 345 aa28.27■■■□□ 2.12
SFSWAP-204ENST00000535399 FGFR2P21802 821 aa28.26■■■□□ 2.11
SFSWAP-204ENST00000535399 LMOD1P29536 600 aaPredicted RBP28.26■■■□□ 2.11
SFSWAP-204ENST00000535399 RRP1P56182 461 aaKnown RBP28.26■■■□□ 2.11
SFSWAP-204ENST00000535399 SSH3Q8TE77 659 aa28.26■■■□□ 2.11
SFSWAP-204ENST00000535399 ZBTB40Q9NUA8 1239 aa28.26■■■□□ 2.11
SFSWAP-204ENST00000535399 SCN9AQ15858 1988 aa28.26■■■□□ 2.11
SFSWAP-204ENST00000535399 USP17L3A6NCW0 530 aa28.25■■■□□ 2.11
SFSWAP-204ENST00000535399 USP17L4A6NCW7 530 aa28.25■■■□□ 2.11
SFSWAP-204ENST00000535399 PUM3Q15397 648 aaKnown RBP28.25■■■□□ 2.11
SFSWAP-204ENST00000535399 CEP85Q6P2H3 762 aa28.25■■■□□ 2.11
SFSWAP-204ENST00000535399 USP17L1Q7RTZ2 530 aa28.25■■■□□ 2.11
SFSWAP-204ENST00000535399 ZNF804AQ7Z570 1209 aa28.24■■■□□ 2.11
SFSWAP-204ENST00000535399 DPF2Q92785 391 aa28.24■■■□□ 2.11
SFSWAP-204ENST00000535399 FAM84BQ96KN1 310 aaPredicted RBP28.24■■■□□ 2.11
SFSWAP-204ENST00000535399 CEP126Q9P2H0 1117 aa28.24■■■□□ 2.11
SFSWAP-204ENST00000535399 SCN4AP35499 1836 aa28.23■■■□□ 2.11
SFSWAP-204ENST00000535399 POTEIP0CG38 1075 aa28.23■■■□□ 2.11
SFSWAP-204ENST00000535399 POTEJP0CG39 1038 aa28.23■■■□□ 2.11
SFSWAP-204ENST00000535399 IL1R1P14778 569 aa28.23■■■□□ 2.11
SFSWAP-204ENST00000535399 RPS12P25398 132 aaKnown RBP28.23■■■□□ 2.11
SFSWAP-204ENST00000535399 GYG1P46976 350 aa28.23■■■□□ 2.11
SFSWAP-204ENST00000535399 RSBN1LQ6PCB5 846 aaPredicted RBP28.23■■■□□ 2.11
SFSWAP-204ENST00000535399 SHTN1A0MZ66 631 aa28.22■■■□□ 2.11
SFSWAP-204ENST00000535399 DACT2Q5SW24 774 aa28.22■■■□□ 2.11
SFSWAP-204ENST00000535399 CHMP4BQ9H444 224 aaKnown RBP28.22■■■□□ 2.11
SFSWAP-204ENST00000535399 CNOT7Q9UIV1 285 aaKnown RBP28.22■■■□□ 2.11
SFSWAP-204ENST00000535399 ZNF609O15014 1411 aa28.21■■■□□ 2.11
SFSWAP-204ENST00000535399 HIBADHP31937 336 aaKnown RBP28.21■■■□□ 2.11
SFSWAP-204ENST00000535399 STRIP1Q5VSL9 837 aa28.21■■■□□ 2.11
SFSWAP-204ENST00000535399 FBXO33Q7Z6M2 555 aa28.21■■■□□ 2.11
SFSWAP-204ENST00000535399 LPIN2Q92539 896 aa28.21■■■□□ 2.11
SFSWAP-204ENST00000535399 GMLQ99445 158 aa28.21■■■□□ 2.11
SFSWAP-204ENST00000535399 IFIT1P09914 478 aaKnown RBP28.2■■■□□ 2.1
SFSWAP-204ENST00000535399 PNMA8AQ86V59 439 aaPredicted RBP28.2■■■□□ 2.1
SFSWAP-204ENST00000535399 MICALL2Q8IY33 904 aa28.2■■■□□ 2.1
SFSWAP-204ENST00000535399 ADARB2Q9NS39 739 aaKnown RBP28.2■■■□□ 2.1
SFSWAP-204ENST00000535399 GTF2IP78347 998 aa28.19■■■□□ 2.1
SFSWAP-204ENST00000535399 EAPPQ56P03 285 aaPredicted RBP28.19■■■□□ 2.1
SFSWAP-204ENST00000535399 TTLL5Q6EMB2 1281 aa28.19■■■□□ 2.1
SFSWAP-204ENST00000535399 LDHDQ86WU2 507 aa28.19■■■□□ 2.1
SFSWAP-204ENST00000535399 SMC1BQ8NDV3 1235 aa28.19■■■□□ 2.1
SFSWAP-204ENST00000535399 AGBL3Q8NEM8 1001 aa28.19■■■□□ 2.1
SFSWAP-204ENST00000535399 TDRD7Q8NHU6 1098 aaKnown RBP28.19■■■□□ 2.1
SFSWAP-204ENST00000535399 MXD3Q9BW11 206 aa28.19■■■□□ 2.1
SFSWAP-204ENST00000535399 SLC5A1P13866 664 aa28.18■■■□□ 2.1
SFSWAP-204ENST00000535399 FSTL1Q12841 308 aa28.18■■■□□ 2.1
SFSWAP-204ENST00000535399 ATP2B3Q16720 1220 aa28.18■■■□□ 2.1
SFSWAP-204ENST00000535399 FBXW7Q969H0 707 aa28.18■■■□□ 2.1
SFSWAP-204ENST00000535399 TFCP2Q12800 502 aa28.17■■■□□ 2.1
SFSWAP-204ENST00000535399 G3BP1Q13283 466 aaKnown RBP eCLIP28.17■■■□□ 2.1
SFSWAP-204ENST00000535399 USP50Q70EL3 339 aaPredicted RBP28.17■■■□□ 2.1
SFSWAP-204ENST00000535399 NOP58Q9Y2X3 529 aaKnown RBP28.17■■■□□ 2.1
SFSWAP-204ENST00000535399 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.17■■■□□ 2.1
SFSWAP-204ENST00000535399 H7C1D1 291 aa28.16■■■□□ 2.1
SFSWAP-204ENST00000535399 BCAMP50895 628 aa28.16■■■□□ 2.1
SFSWAP-204ENST00000535399 CAVIN4Q5BKX8 364 aa28.16■■■□□ 2.1
SFSWAP-204ENST00000535399 SASH1O94885 1247 aa28.15■■■□□ 2.1
SFSWAP-204ENST00000535399 CHADLQ6NUI6 762 aa28.15■■■□□ 2.1
SFSWAP-204ENST00000535399 SIRT2Q8IXJ6 389 aa28.15■■■□□ 2.1
SFSWAP-204ENST00000535399 RPAP2Q8IXW5 612 aaPredicted RBP28.15■■■□□ 2.1
SFSWAP-204ENST00000535399 TRPM4Q8TD43 1214 aa28.15■■■□□ 2.1
SFSWAP-204ENST00000535399 PSME4Q14997 1843 aa28.14■■■□□ 2.1
SFSWAP-204ENST00000535399 SURF6O75683 361 aaKnown RBP28.14■■■□□ 2.1
SFSWAP-204ENST00000535399 ZNF280AP59817 542 aaPredicted RBP28.14■■■□□ 2.1
SFSWAP-204ENST00000535399 VPS37DQ86XT2 251 aa28.14■■■□□ 2.1
SFSWAP-204ENST00000535399 FAM205AQ6ZU69 1335 aa28.14■■■□□ 2.09
SFSWAP-204ENST00000535399 MYO3BQ8WXR4 1341 aa28.14■■■□□ 2.09
SFSWAP-204ENST00000535399 HIRAP54198 1017 aaPredicted RBP28.13■■■□□ 2.09
SFSWAP-204ENST00000535399 SAMD7Q7Z3H4 446 aa28.13■■■□□ 2.09
SFSWAP-204ENST00000535399 CLEC11AQ9Y240 323 aa28.13■■■□□ 2.09
SFSWAP-204ENST00000535399 ADAMTSL1Q8N6G6 1762 aa28.12■■■□□ 2.09
SFSWAP-204ENST00000535399 EGFRP00533 1210 aa28.12■■■□□ 2.09
SFSWAP-204ENST00000535399 USP17L8P0C7I0 530 aa28.12■■■□□ 2.09
SFSWAP-204ENST00000535399 TIMM10P62072 90 aa28.12■■■□□ 2.09
SFSWAP-204ENST00000535399 CERS5Q8N5B7 392 aa28.12■■■□□ 2.09
SFSWAP-204ENST00000535399 JAG2Q9Y219 1238 aa28.12■■■□□ 2.09
SFSWAP-204ENST00000535399 AKAP2Q9Y2D5 859 aa28.12■■■□□ 2.09
SFSWAP-204ENST00000535399 ZNF646O15015 1829 aaPredicted RBP28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms