RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 ZBTB40Q9NUA8 1239 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 MYO3BQ8WXR4 1341 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 WDR90Q96KV7 1748 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 ZNF609O15014 1411 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 YDJCA8MPS7 323 aa18.14■□□□□ 0.49
LIMS1-213ENST00000496653 RAD17O75943 681 aa18.14■□□□□ 0.49
LIMS1-213ENST00000496653 G3BP1Q13283 466 aaKnown RBP eCLIP18.14■□□□□ 0.49
LIMS1-213ENST00000496653 POLA2Q14181 598 aa18.14■□□□□ 0.49
LIMS1-213ENST00000496653 HSP90AB4PQ58FF6 505 aa18.14■□□□□ 0.49
LIMS1-213ENST00000496653 PNMA8AQ86V59 439 aaPredicted RBP18.14■□□□□ 0.49
LIMS1-213ENST00000496653 VPS37DQ86XT2 251 aa18.14■□□□□ 0.49
LIMS1-213ENST00000496653 SSH3Q8TE77 659 aa18.14■□□□□ 0.49
LIMS1-213ENST00000496653 LPIN2Q92539 896 aa18.14■□□□□ 0.49
LIMS1-213ENST00000496653 RRAGCQ9HB90 399 aa18.14■□□□□ 0.49
LIMS1-213ENST00000496653 AKAP2Q9Y2D5 859 aa18.14■□□□□ 0.49
LIMS1-213ENST00000496653 SPEF2Q9C093 1822 aa18.14■□□□□ 0.49
LIMS1-213ENST00000496653 PNMA6EA0A0J9YXQ4 647 aa18.13■□□□□ 0.49
LIMS1-213ENST00000496653 USP17L3A6NCW0 530 aa18.13■□□□□ 0.49
LIMS1-213ENST00000496653 USP17L4A6NCW7 530 aa18.13■□□□□ 0.49
LIMS1-213ENST00000496653 MMP14P50281 582 aa18.13■□□□□ 0.49
LIMS1-213ENST00000496653 CEP85Q6P2H3 762 aa18.13■□□□□ 0.49
LIMS1-213ENST00000496653 USP17L1Q7RTZ2 530 aa18.13■□□□□ 0.49
LIMS1-213ENST00000496653 ATG9AQ7Z3C6 839 aa18.13■□□□□ 0.49
LIMS1-213ENST00000496653 DPF2Q92785 391 aa18.13■□□□□ 0.49
LIMS1-213ENST00000496653 C1orf115Q9H7X2 142 aa18.13■□□□□ 0.49
LIMS1-213ENST00000496653 KIF3CO14782 793 aa18.12■□□□□ 0.49
LIMS1-213ENST00000496653 TOMM70O94826 608 aa18.12■□□□□ 0.49
LIMS1-213ENST00000496653 OS9Q13438 667 aaPredicted RBP18.12■□□□□ 0.49
LIMS1-213ENST00000496653 AAMPQ13685 434 aa18.12■□□□□ 0.49
LIMS1-213ENST00000496653 STRIP1Q5VSL9 837 aa18.12■□□□□ 0.49
LIMS1-213ENST00000496653 ERC1Q8IUD2 1116 aa18.12■□□□□ 0.49
LIMS1-213ENST00000496653 PA2G4Q9UQ80 394 aaKnown RBP18.12■□□□□ 0.49
LIMS1-213ENST00000496653 PSMD14O00487 310 aa18.11■□□□□ 0.49
LIMS1-213ENST00000496653 VIL1P09327 827 aaKnown RBP18.11■□□□□ 0.49
LIMS1-213ENST00000496653 HIBADHP31937 336 aaKnown RBP18.11■□□□□ 0.49
LIMS1-213ENST00000496653 ATP2B3Q16720 1220 aa18.11■□□□□ 0.49
LIMS1-213ENST00000496653 C20orf194Q5TEA3 1177 aa18.11■□□□□ 0.49
LIMS1-213ENST00000496653 AGBL3Q8NEM8 1001 aa18.11■□□□□ 0.49
LIMS1-213ENST00000496653 RBM46Q8TBY0 533 aaKnown RBP18.11■□□□□ 0.49
LIMS1-213ENST00000496653 CD209Q9NNX6 404 aa18.11■□□□□ 0.49
LIMS1-213ENST00000496653 GPRC5DQ9NZD1 345 aa18.11■□□□□ 0.49
LIMS1-213ENST00000496653 IRS2Q9Y4H2 1338 aa18.11■□□□□ 0.49
LIMS1-213ENST00000496653 CCDC88AQ3V6T2 1871 aa18.1■□□□□ 0.49
LIMS1-213ENST00000496653 H7C1D1 291 aa18.1■□□□□ 0.49
LIMS1-213ENST00000496653 IL1R1P14778 569 aa18.1■□□□□ 0.49
LIMS1-213ENST00000496653 FGFR2P21802 821 aa18.1■□□□□ 0.49
LIMS1-213ENST00000496653 EPHX2P34913 555 aa18.1■□□□□ 0.49
LIMS1-213ENST00000496653 GMPSP49915 693 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-213ENST00000496653 SCNN1DP51172 638 aa18.1■□□□□ 0.49
LIMS1-213ENST00000496653 RSBN1LQ6PCB5 846 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-213ENST00000496653 TAF1DQ9H5J8 278 aaPredicted RBP18.1■□□□□ 0.49
LIMS1-213ENST00000496653 SURF6O75683 361 aaKnown RBP18.09■□□□□ 0.49
LIMS1-213ENST00000496653 KLRK1P26718 216 aa18.09■□□□□ 0.49
LIMS1-213ENST00000496653 TXNRD3Q86VQ6 643 aa18.09■□□□□ 0.49
LIMS1-213ENST00000496653 SMC1BQ8NDV3 1235 aa18.09■□□□□ 0.49
LIMS1-213ENST00000496653 ADARB2Q9NS39 739 aaKnown RBP18.09■□□□□ 0.49
LIMS1-213ENST00000496653 GNL3LQ9NVN8 582 aaKnown RBP18.09■□□□□ 0.49
LIMS1-213ENST00000496653 NOP58Q9Y2X3 529 aaKnown RBP18.09■□□□□ 0.49
LIMS1-213ENST00000496653 FRAT2O75474 233 aaPredicted RBP18.08■□□□□ 0.48
LIMS1-213ENST00000496653 FKBP1AP62942 108 aaKnown RBP18.08■□□□□ 0.48
LIMS1-213ENST00000496653 FSTL1Q12841 308 aa18.08■□□□□ 0.48
LIMS1-213ENST00000496653 USP50Q70EL3 339 aaPredicted RBP18.08■□□□□ 0.48
LIMS1-213ENST00000496653 LDHDQ86WU2 507 aa18.08■□□□□ 0.48
LIMS1-213ENST00000496653 WTIPA6NIX2 430 aaPredicted RBP18.07■□□□□ 0.48
LIMS1-213ENST00000496653 SNAP23O00161 211 aa18.07■□□□□ 0.48
LIMS1-213ENST00000496653 TTLL5Q6EMB2 1281 aa18.07■□□□□ 0.48
LIMS1-213ENST00000496653 FBXO33Q7Z6M2 555 aa18.07■□□□□ 0.48
LIMS1-213ENST00000496653 OGFOD1Q8N543 542 aa18.07■□□□□ 0.48
LIMS1-213ENST00000496653 FBXW7Q969H0 707 aa18.07■□□□□ 0.48
LIMS1-213ENST00000496653 FAM84BQ96KN1 310 aaPredicted RBP18.07■□□□□ 0.48
LIMS1-213ENST00000496653 GPR108Q9NPR9 543 aa18.07■□□□□ 0.48
LIMS1-213ENST00000496653 SCN4AP35499 1836 aa18.07■□□□□ 0.48
LIMS1-213ENST00000496653 POTECB2RU33 542 aa18.06■□□□□ 0.48
LIMS1-213ENST00000496653 SEMA3EO15041 775 aa18.06■□□□□ 0.48
LIMS1-213ENST00000496653 ZBTB22O15209 634 aa18.06■□□□□ 0.48
LIMS1-213ENST00000496653 SASH1O94885 1247 aa18.06■□□□□ 0.48
LIMS1-213ENST00000496653 GYG1P46976 350 aa18.06■□□□□ 0.48
LIMS1-213ENST00000496653 DACT2Q5SW24 774 aa18.06■□□□□ 0.48
LIMS1-213ENST00000496653 MICALL2Q8IY33 904 aa18.06■□□□□ 0.48
LIMS1-213ENST00000496653 TDRD7Q8NHU6 1098 aaKnown RBP18.06■□□□□ 0.48
LIMS1-213ENST00000496653 TBC1D22AQ8WUA7 517 aa18.06■□□□□ 0.48
LIMS1-213ENST00000496653 FAM205AQ6ZU69 1335 aa18.05■□□□□ 0.48
LIMS1-213ENST00000496653 A0A1B0GUL6 1792 aa18.05■□□□□ 0.48
LIMS1-213ENST00000496653 GTF2IP78347 998 aa18.05■□□□□ 0.48
LIMS1-213ENST00000496653 TFCP2Q12800 502 aa18.05■□□□□ 0.48
LIMS1-213ENST00000496653 CNOT7Q9UIV1 285 aaKnown RBP18.05■□□□□ 0.48
LIMS1-213ENST00000496653 HDAC9Q9UKV0 1011 aa18.05■□□□□ 0.48
LIMS1-213ENST00000496653 A0A1B0GUL7 405 aa18.04■□□□□ 0.48
LIMS1-213ENST00000496653 RAB11FIP3O75154 756 aa18.04■□□□□ 0.48
LIMS1-213ENST00000496653 USP17L8P0C7I0 530 aa18.04■□□□□ 0.48
LIMS1-213ENST00000496653 EPS15P42566 896 aa18.04■□□□□ 0.48
LIMS1-213ENST00000496653 EAPPQ56P03 285 aaPredicted RBP18.04■□□□□ 0.48
LIMS1-213ENST00000496653 GORABQ5T7V8 394 aa18.04■□□□□ 0.48
LIMS1-213ENST00000496653 ZC3H15Q8WU90 426 aaKnown RBP18.04■□□□□ 0.48
LIMS1-213ENST00000496653 ZBTB12Q9Y330 459 aaPredicted RBP18.04■□□□□ 0.48
LIMS1-213ENST00000496653 C1QTNF8P60827 252 aa18.03■□□□□ 0.48
LIMS1-213ENST00000496653 KCNQ5Q9NR82 932 aa18.03■□□□□ 0.48
LIMS1-213ENST00000496653 SUGT1Q9Y2Z0 365 aa18.03■□□□□ 0.48
LIMS1-213ENST00000496653 BCAMP50895 628 aa18.02■□□□□ 0.48
LIMS1-213ENST00000496653 ZNF280AP59817 542 aaPredicted RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms