RNA–Protein interactions for RNA: ENST00000491292.5

ERCC3-208, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, human

TSL 2

Gene ERCC3, Length 4,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERCC3-208	ENST00000491292	RAI14	Q9P0K7	980 aa		11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	KIAA1468	Q9P260	1216 aa		11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	EID1	Q9Y6B2	187 aa		11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	PRR36	Q9H6K5	1346 aa		11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	EFCAB6	Q5THR3	1501 aa		11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	CYP21A2	P08686	494 aa		11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	RAD51AP2	Q09MP3	1159 aa		11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	E4F1	Q66K89	784 aa	Predicted RBP	11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	MICU3	Q86XE3	530 aa		11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	TTC5	Q8N0Z6	440 aa		11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	SRRT	Q9BXP5	876 aa	Known RBP	11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	TULP1	O00294	542 aa	Predicted RBP	11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	GTF2A1	P52655	376 aa	Predicted RBP	11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	KSR2	Q6VAB6	950 aa		11.33	□□□□□ -0.6
ERCC3-208	ENST00000491292	TAF5L	O75529	589 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	PPARD	Q03181	441 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	PNOC	Q13519	176 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	LONRF3	Q496Y0	759 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	TSPYL1	Q9H0U9	437 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292		A0A087WZG4	1122 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	DHX16	O60231	1041 aa	Known RBP	11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	POLA2	Q14181	598 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	ZNF827	Q17R98	1081 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	DHX40	Q8IX18	779 aa	Known RBP	11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	CAGE1	Q8TC20	777 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	UHRF1BP1L	A0JNW5	1464 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	ERLIN1	O75477	346 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	EIF3J	O75822	258 aa	Known RBP	11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	SASH1	O94885	1247 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	IFIT1	P09914	478 aa	Known RBP	11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	ARMCX5	Q6P1M9	558 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	COPS6	Q7L5N1	327 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	BAG1	Q99933	345 aa	Predicted RBP	11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	NLRP2	Q9NX02	1062 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	HOOK1	Q9UJC3	728 aa	Known RBP	11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	CPSF1	Q10570	1443 aa	Known RBP	11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	IRX3	P78415	501 aa	Predicted RBP	11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	WWC2	Q6AWC2	1192 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	JMY	Q8N9B5	988 aa		11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	IPO4	Q8TEX9	1081 aa	Known RBP	11.32	□□□□□ -0.6
ERCC3-208	ENST00000491292	ADGRB1	O14514	1584 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	EPB41L2	O43491	1005 aa	Known RBP	11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	KIF5C	O60282	957 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	XAGE3	Q8WTP9	111 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	LRRFIP1	Q32MZ4	808 aa	Known RBP	11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	ZNF569	Q5MCW4	686 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	TTC21A	Q8NDW8	1320 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	MAP3K5	Q99683	1374 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	FANCL	Q9NW38	375 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	ZNF446	Q9NWS9	450 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	CDC25B	P30305	580 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	EIF4A1	P60842	406 aa	Known RBP	11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	FKBP15	Q5T1M5	1219 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	NSUN7	Q8NE18	718 aa	Known RBP	11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	KCNG4	Q8TDN1	519 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	GOLGA1	Q92805	767 aa		11.31	□□□□□ -0.6
ERCC3-208	ENST00000491292	CAMSAP1	Q5T5Y3	1602 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	FLT4	P35916	1363 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	TMEM232	C9JQI7	657 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	MYL5	Q02045	173 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	SAFB	Q15424	915 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	DRC1	Q96MC2	740 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	CLIC6	Q96NY7	704 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	PDE11A	Q9HCR9	933 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292		H0YHG0	523 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	AFM	P43652	599 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	NYAP1	Q6ZVC0	841 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	RCOR1	Q9UKL0	485 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	MROH2A	A6NES4	1674 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	MET	P08581	1390 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	WDHD1	O75717	1129 aa	Predicted RBP	11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	HMGB1	P09429	215 aa	Known RBP	11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	HOXC9	P31274	260 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	TSR1	Q2NL82	804 aa	Known RBP	11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	CCDC102B	Q68D86	513 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	LINS1	Q8NG48	757 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	NUP133	Q8WUM0	1156 aa		11.3	□□□□□ -0.6
ERCC3-208	ENST00000491292	PFKFB1	P16118	471 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	PLA2G4A	P47712	749 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	IMMT	Q16891	758 aa	Known RBP	11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	TTC39A	Q5SRH9	613 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	LMBR1L	Q6UX01	489 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	DPF2	Q92785	391 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	ALG1	Q9BT22	464 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	IMPACT	Q9P2X3	320 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	AMOTL2	Q9Y2J4	779 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	PPP2R2C	Q9Y2T4	447 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	ADGRB3	O60242	1522 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	COBL	O75128	1261 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	CYP2C19	P33261	490 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	NLRP12	P59046	1061 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	DNAJC21	Q5F1R6	531 aa	Known RBP	11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	PARD6B	Q9BYG5	372 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	IRX2	Q9BZI1	471 aa	Predicted RBP	11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	DEF6	Q9H4E7	631 aa		11.29	□□□□□ -0.6
ERCC3-208	ENST00000491292	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms