RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 TOMM70O94826 608 aa17.65■□□□□ 0.42
BRCA1-211ENST00000472490 IL15P40933 162 aaPredicted RBP17.65■□□□□ 0.42
BRCA1-211ENST00000472490 ZNF804AQ7Z570 1209 aa17.65■□□□□ 0.42
BRCA1-211ENST00000472490 HACL1Q9UJ83 578 aa17.65■□□□□ 0.42
BRCA1-211ENST00000472490 PUM3Q15397 648 aaKnown RBP17.64■□□□□ 0.41
BRCA1-211ENST00000472490 SIL1Q9H173 461 aa17.64■□□□□ 0.41
BRCA1-211ENST00000472490 CEP126Q9P2H0 1117 aa17.64■□□□□ 0.41
BRCA1-211ENST00000472490 CCDC88AQ3V6T2 1871 aa17.63■□□□□ 0.41
BRCA1-211ENST00000472490 WTIPA6NIX2 430 aaPredicted RBP17.63■□□□□ 0.41
BRCA1-211ENST00000472490 KCNA4P22459 653 aa17.63■□□□□ 0.41
BRCA1-211ENST00000472490 RPS12P25398 132 aaKnown RBP17.63■□□□□ 0.41
BRCA1-211ENST00000472490 ATP8B2P98198 1209 aa17.63■□□□□ 0.41
BRCA1-211ENST00000472490 CAVIN4Q5BKX8 364 aa17.63■□□□□ 0.41
BRCA1-211ENST00000472490 PNMA8AQ86V59 439 aaPredicted RBP17.63■□□□□ 0.41
BRCA1-211ENST00000472490 WDR90Q96KV7 1748 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 PNMA6EA0A0J9YXQ4 647 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 USP17L3A6NCW0 530 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 USP17L4A6NCW7 530 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 POTECB2RU33 542 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 PSMD14O00487 310 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 IFIT1P09914 478 aaKnown RBP17.62■□□□□ 0.41
BRCA1-211ENST00000472490 RRP1P56182 461 aaKnown RBP17.62■□□□□ 0.41
BRCA1-211ENST00000472490 USP17L1Q7RTZ2 530 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 TXNRD3Q86VQ6 643 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 VPS37DQ86XT2 251 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 VGLL2Q8N8G2 317 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 DPF2Q92785 391 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 C1orf115Q9H7X2 142 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 ZBTB40Q9NUA8 1239 aa17.62■□□□□ 0.41
BRCA1-211ENST00000472490 VIL1P09327 827 aaKnown RBP17.61■□□□□ 0.41
BRCA1-211ENST00000472490 KLRK1P26718 216 aa17.61■□□□□ 0.41
BRCA1-211ENST00000472490 EPHX2P34913 555 aa17.61■□□□□ 0.41
BRCA1-211ENST00000472490 SCNN1DP51172 638 aa17.61■□□□□ 0.41
BRCA1-211ENST00000472490 G3BP1Q13283 466 aaKnown RBP eCLIP17.61■□□□□ 0.41
BRCA1-211ENST00000472490 ATG9AQ7Z3C6 839 aa17.61■□□□□ 0.41
BRCA1-211ENST00000472490 RBM46Q8TBY0 533 aaKnown RBP17.61■□□□□ 0.41
BRCA1-211ENST00000472490 SSH3Q8TE77 659 aa17.61■□□□□ 0.41
BRCA1-211ENST00000472490 LPIN2Q92539 896 aa17.61■□□□□ 0.41
BRCA1-211ENST00000472490 TAF1DQ9H5J8 278 aaPredicted RBP17.61■□□□□ 0.41
BRCA1-211ENST00000472490 CD209Q9NNX6 404 aa17.61■□□□□ 0.41
BRCA1-211ENST00000472490 GPRC5DQ9NZD1 345 aa17.61■□□□□ 0.41
BRCA1-211ENST00000472490 PA2G4Q9UQ80 394 aaKnown RBP17.61■□□□□ 0.41
BRCA1-211ENST00000472490 H7C1D1 291 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 SNAP23O00161 211 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 HMMRO75330 724 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 SLC5A1P13866 664 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 HIBADHP31937 336 aaKnown RBP17.6■□□□□ 0.41
BRCA1-211ENST00000472490 GMPSP49915 693 aaPredicted RBP17.6■□□□□ 0.41
BRCA1-211ENST00000472490 POLA2Q14181 598 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 C20orf194Q5TEA3 1177 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 STRIP1Q5VSL9 837 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 RPAP2Q8IXW5 612 aaPredicted RBP17.6■□□□□ 0.41
BRCA1-211ENST00000472490 AGBL3Q8NEM8 1001 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 AKAP2Q9Y2D5 859 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 MYO3BQ8WXR4 1341 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 SPEF2Q9C093 1822 aa17.6■□□□□ 0.41
BRCA1-211ENST00000472490 IRS2Q9Y4H2 1338 aa17.59■□□□□ 0.41
BRCA1-211ENST00000472490 IL1R1P14778 569 aa17.59■□□□□ 0.41
BRCA1-211ENST00000472490 FSTL1Q12841 308 aa17.59■□□□□ 0.41
BRCA1-211ENST00000472490 TTLL5Q6EMB2 1281 aa17.59■□□□□ 0.41
BRCA1-211ENST00000472490 CEP85Q6P2H3 762 aa17.59■□□□□ 0.41
BRCA1-211ENST00000472490 RSBN1LQ6PCB5 846 aaPredicted RBP17.59■□□□□ 0.41
BRCA1-211ENST00000472490 SMC1BQ8NDV3 1235 aa17.59■□□□□ 0.41
BRCA1-211ENST00000472490 KCNQ5Q9NR82 932 aa17.59■□□□□ 0.41
BRCA1-211ENST00000472490 ADARB2Q9NS39 739 aaKnown RBP17.59■□□□□ 0.41
BRCA1-211ENST00000472490 FGFR2P21802 821 aa17.58■□□□□ 0.4
BRCA1-211ENST00000472490 MMP14P50281 582 aa17.58■□□□□ 0.4
BRCA1-211ENST00000472490 C1QTNF8P60827 252 aa17.58■□□□□ 0.4
BRCA1-211ENST00000472490 OS9Q13438 667 aaPredicted RBP17.58■□□□□ 0.4
BRCA1-211ENST00000472490 USP50Q70EL3 339 aaPredicted RBP17.58■□□□□ 0.4
BRCA1-211ENST00000472490 FBXW7Q969H0 707 aa17.58■□□□□ 0.4
BRCA1-211ENST00000472490 FAM84BQ96KN1 310 aaPredicted RBP17.58■□□□□ 0.4
BRCA1-211ENST00000472490 CNOT7Q9UIV1 285 aaKnown RBP17.58■□□□□ 0.4
BRCA1-211ENST00000472490 ZBTB12Q9Y330 459 aaPredicted RBP17.58■□□□□ 0.4
BRCA1-211ENST00000472490 FRAT2O75474 233 aaPredicted RBP17.57■□□□□ 0.4
BRCA1-211ENST00000472490 SURF6O75683 361 aaKnown RBP17.57■□□□□ 0.4
BRCA1-211ENST00000472490 SASH1O94885 1247 aa17.57■□□□□ 0.4
BRCA1-211ENST00000472490 EPS15P42566 896 aa17.57■□□□□ 0.4
BRCA1-211ENST00000472490 GYG1P46976 350 aa17.57■□□□□ 0.4
BRCA1-211ENST00000472490 ATP2B3Q16720 1220 aa17.57■□□□□ 0.4
BRCA1-211ENST00000472490 EAPPQ56P03 285 aaPredicted RBP17.57■□□□□ 0.4
BRCA1-211ENST00000472490 HSP90AB4PQ58FF6 505 aa17.57■□□□□ 0.4
BRCA1-211ENST00000472490 LDHDQ86WU2 507 aa17.57■□□□□ 0.4
BRCA1-211ENST00000472490 ZNF609O15014 1411 aa17.56■□□□□ 0.4
BRCA1-211ENST00000472490 GTF2IP78347 998 aa17.56■□□□□ 0.4
BRCA1-211ENST00000472490 MICALL2Q8IY33 904 aa17.56■□□□□ 0.4
BRCA1-211ENST00000472490 OGFOD1Q8N543 542 aa17.56■□□□□ 0.4
BRCA1-211ENST00000472490 NOP58Q9Y2X3 529 aaKnown RBP17.56■□□□□ 0.4
BRCA1-211ENST00000472490 DACT2Q5SW24 774 aa17.55■□□□□ 0.4
BRCA1-211ENST00000472490 FBXO33Q7Z6M2 555 aa17.55■□□□□ 0.4
BRCA1-211ENST00000472490 ERC1Q8IUD2 1116 aa17.55■□□□□ 0.4
BRCA1-211ENST00000472490 TDRD7Q8NHU6 1098 aaKnown RBP17.55■□□□□ 0.4
BRCA1-211ENST00000472490 GNL3LQ9NVN8 582 aaKnown RBP17.55■□□□□ 0.4
BRCA1-211ENST00000472490 CLEC11AQ9Y240 323 aa17.55■□□□□ 0.4
BRCA1-211ENST00000472490 SCN4AP35499 1836 aa17.54■□□□□ 0.4
BRCA1-211ENST00000472490 USP17L8P0C7I0 530 aa17.54■□□□□ 0.4
BRCA1-211ENST00000472490 FKBP1AP62942 108 aaKnown RBP17.54■□□□□ 0.4
BRCA1-211ENST00000472490 TFCP2Q12800 502 aa17.54■□□□□ 0.4
BRCA1-211ENST00000472490 CHADLQ6NUI6 762 aa17.54■□□□□ 0.4
BRCA1-211ENST00000472490 HDAC9Q9UKV0 1011 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms