RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 GLYCTKQ8IVS8 523 aa4.43□□□□□ -1.7
PTPRC-208ENST00000427110 GALNT11Q8NCW6 608 aa4.43□□□□□ -1.7
PTPRC-208ENST00000427110 POP1Q99575 1024 aaKnown RBP4.43□□□□□ -1.7
PTPRC-208ENST00000427110 TRAIPQ9BWF2 469 aa4.43□□□□□ -1.7
PTPRC-208ENST00000427110 ZBTB7CA1YPR0 619 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 DLL1O00548 723 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 WISP1O95388 367 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 RPLP1P05386 114 aaKnown RBP4.42□□□□□ -1.7
PTPRC-208ENST00000427110 NOS3P29474 1203 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 CDC27P30260 824 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 B4GALNT3Q6L9W6 998 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 XKR5Q6UX68 686 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 GJD3Q8N144 294 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 AGGF1Q8N302 714 aaeCLIP4.42□□□□□ -1.7
PTPRC-208ENST00000427110 DTWD1Q8N5C7 304 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 WFDC12Q8WWY7 111 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 KCNK4Q9NYG8 393 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 SALL4Q9UJQ4 1053 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 PPME1Q9Y570 386 aa4.42□□□□□ -1.7
PTPRC-208ENST00000427110 NFKBIEO00221 500 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 DDX3YO15523 660 aaKnown RBP4.41□□□□□ -1.7
PTPRC-208ENST00000427110 ARHGAP4P98171 946 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 FOXD4L6Q3SYB3 417 aaPredicted RBP4.41□□□□□ -1.7
PTPRC-208ENST00000427110 NKAPLQ5M9Q1 402 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 USPL1Q5W0Q7 1092 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 HGSNATQ68CP4 663 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 FOXD4L3Q6VB84 417 aaPredicted RBP4.41□□□□□ -1.7
PTPRC-208ENST00000427110 TXNDC2Q86VQ3 553 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 SNX29Q8TEQ0 813 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 TP53INP1Q96A56 240 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 MEGF10Q96KG7 1140 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 OSMRQ99650 979 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 ZKSCAN3Q9BRR0 538 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 DZANK1Q9NVP4 752 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 EGFL7Q9UHF1 273 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 BRPF3Q9ULD4 1205 aa4.41□□□□□ -1.7
PTPRC-208ENST00000427110 METTL12A8MUP2 240 aa4.4□□□□□ -1.71
PTPRC-208ENST00000427110 DYRK3O43781 588 aa4.4□□□□□ -1.71
PTPRC-208ENST00000427110 PTPRAP18433 802 aa4.4□□□□□ -1.71
PTPRC-208ENST00000427110 ORC1Q13415 861 aa4.4□□□□□ -1.71
PTPRC-208ENST00000427110 IGF2-ASQ6U949 168 aa4.4□□□□□ -1.71
PTPRC-208ENST00000427110 LOC100996750A0A140TA64 210 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 F8W735 103 aaPredicted RBP4.39□□□□□ -1.71
PTPRC-208ENST00000427110 PDE2AO00408 941 aaPredicted RBP4.39□□□□□ -1.71
PTPRC-208ENST00000427110 TM4SF5O14894 197 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 FSCN2O14926 492 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 ADAM11O75078 769 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 BRD1O95696 1058 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 USP5P45974 858 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 NLRP12P59046 1061 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 TRIM26Q12899 539 aaPredicted RBP4.39□□□□□ -1.71
PTPRC-208ENST00000427110 PEAR1Q5VY43 1037 aaPredicted RBP4.39□□□□□ -1.71
PTPRC-208ENST00000427110 ASAP3Q8TDY4 903 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 SLC7A3Q8WY07 619 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 KLHDC7BQ96G42 594 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 SSBP4Q9BWG4 385 aaPredicted RBP4.39□□□□□ -1.71
PTPRC-208ENST00000427110 KRTAP4-6Q9BYQ5 205 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 AKTIPQ9H8T0 292 aa4.39□□□□□ -1.71
PTPRC-208ENST00000427110 PATL2C9JE40 543 aaKnown RBP4.38□□□□□ -1.71
PTPRC-208ENST00000427110 GLB1P16278 677 aa4.38□□□□□ -1.71
PTPRC-208ENST00000427110 CD68P34810 354 aaPredicted RBP4.38□□□□□ -1.71
PTPRC-208ENST00000427110 EHHADHQ08426 723 aa4.38□□□□□ -1.71
PTPRC-208ENST00000427110 ACAD11Q709F0 780 aa4.38□□□□□ -1.71
PTPRC-208ENST00000427110 UBASH3BQ8TF42 649 aa4.38□□□□□ -1.71
PTPRC-208ENST00000427110 FOXD4L4Q8WXT5 416 aaPredicted RBP4.38□□□□□ -1.71
PTPRC-208ENST00000427110 NXPE3Q969Y0 559 aa4.38□□□□□ -1.71
PTPRC-208ENST00000427110 MRPL18Q9H0U6 180 aaKnown RBP4.38□□□□□ -1.71
PTPRC-208ENST00000427110 ZFYVE28Q9HCC9 887 aa4.38□□□□□ -1.71
PTPRC-208ENST00000427110 AMOTL2Q9Y2J4 779 aa4.38□□□□□ -1.71
PTPRC-208ENST00000427110 FAM177BA6PVY3 158 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 H3BRJ5 948 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 GPR182O15218 404 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 NDUFB5O43674 189 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 EDN3P14138 238 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 PRSS36Q5K4E3 855 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 FAM117BQ6P1L5 589 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 KIAA1211Q6ZU35 1233 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.37□□□□□ -1.71
PTPRC-208ENST00000427110 VN1R5Q7Z5H4 357 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 TMEM102Q8N9M5 508 aaPredicted RBP4.37□□□□□ -1.71
PTPRC-208ENST00000427110 CCER1Q8TC90 406 aaPredicted RBP4.37□□□□□ -1.71
PTPRC-208ENST00000427110 TMC1Q8TDI8 760 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 PMEPA1Q969W9 287 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 ADAM19Q9H013 955 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 MUC3BQ9H195 1237 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 SEC31BQ9NQW1 1179 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 BIN2Q9UBW5 565 aaPredicted RBP4.37□□□□□ -1.71
PTPRC-208ENST00000427110 SOX13Q9UN79 622 aa4.37□□□□□ -1.71
PTPRC-208ENST00000427110 SOWAHDA6NJG2 315 aa4.36□□□□□ -1.71
PTPRC-208ENST00000427110 SOX1O00570 391 aaPredicted RBP4.36□□□□□ -1.71
PTPRC-208ENST00000427110 CABP4P57796 275 aa4.36□□□□□ -1.71
PTPRC-208ENST00000427110 KCNA1Q09470 495 aa4.36□□□□□ -1.71
PTPRC-208ENST00000427110 DUOXA2Q1HG44 320 aa4.36□□□□□ -1.71
PTPRC-208ENST00000427110 SPRED3Q2MJR0 410 aa4.36□□□□□ -1.71
PTPRC-208ENST00000427110 MAP4K3Q8IVH8 894 aa4.36□□□□□ -1.71
PTPRC-208ENST00000427110 CACTIN-AS1Q8N1I8 211 aa4.36□□□□□ -1.71
PTPRC-208ENST00000427110 UBL7Q96S82 380 aaPredicted RBP4.36□□□□□ -1.71
PTPRC-208ENST00000427110 NIF3L1Q9GZT8 377 aa4.36□□□□□ -1.71
PTPRC-208ENST00000427110 SRA1Q9HD15 236 aaKnown RBP4.36□□□□□ -1.71
PTPRC-208ENST00000427110 PODXL2Q9NZ53 605 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms