RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PSMD14O00487 310 aa27.05■■□□□ 1.92
CLN3-207ENST00000395653 KCNQ5Q9NR82 932 aa27.05■■□□□ 1.92
CLN3-207ENST00000395653 PDE8BO95263 885 aa27.04■■□□□ 1.92
CLN3-207ENST00000395653 LMOD1P29536 600 aaPredicted RBP27.04■■□□□ 1.92
CLN3-207ENST00000395653 ATG9AQ7Z3C6 839 aa27.04■■□□□ 1.92
CLN3-207ENST00000395653 TAF1DQ9H5J8 278 aaPredicted RBP27.04■■□□□ 1.92
CLN3-207ENST00000395653 COG6Q9Y2V7 657 aa27.04■■□□□ 1.92
CLN3-207ENST00000395653 SCN9AQ15858 1988 aa27.04■■□□□ 1.92
CLN3-207ENST00000395653 RBM46Q8TBY0 533 aaKnown RBP27.03■■□□□ 1.92
CLN3-207ENST00000395653 SIL1Q9H173 461 aa27.03■■□□□ 1.92
CLN3-207ENST00000395653 PA2G4Q9UQ80 394 aaKnown RBP27.03■■□□□ 1.92
CLN3-207ENST00000395653 GMPSP49915 693 aaPredicted RBP27.02■■□□□ 1.92
CLN3-207ENST00000395653 C1QTNF8P60827 252 aa27.02■■□□□ 1.92
CLN3-207ENST00000395653 C1orf115Q9H7X2 142 aa27.02■■□□□ 1.92
CLN3-207ENST00000395653 PSME4Q14997 1843 aa27.02■■□□□ 1.92
CLN3-207ENST00000395653 PNMA6EA0A0J9YXQ4 647 aa27.01■■□□□ 1.91
CLN3-207ENST00000395653 EPHX2P34913 555 aa27.01■■□□□ 1.91
CLN3-207ENST00000395653 IL15P40933 162 aaPredicted RBP27.01■■□□□ 1.91
CLN3-207ENST00000395653 ZNF804AQ7Z570 1209 aa27.01■■□□□ 1.91
CLN3-207ENST00000395653 CHMP4BQ9H444 224 aaKnown RBP27.01■■□□□ 1.91
CLN3-207ENST00000395653 GPRC5DQ9NZD1 345 aa27.01■■□□□ 1.91
CLN3-207ENST00000395653 ZNF609O15014 1411 aa27.01■■□□□ 1.91
CLN3-207ENST00000395653 VIL1P09327 827 aaKnown RBP27■■□□□ 1.91
CLN3-207ENST00000395653 RPS12P25398 132 aaKnown RBP27■■□□□ 1.91
CLN3-207ENST00000395653 C20orf194Q5TEA3 1177 aa27■■□□□ 1.91
CLN3-207ENST00000395653 ATP8B2P98198 1209 aa26.99■■□□□ 1.91
CLN3-207ENST00000395653 PNMA8AQ86V59 439 aaPredicted RBP26.99■■□□□ 1.91
CLN3-207ENST00000395653 DPF2Q92785 391 aa26.99■■□□□ 1.91
CLN3-207ENST00000395653 CD209Q9NNX6 404 aa26.99■■□□□ 1.91
CLN3-207ENST00000395653 ZBTB12Q9Y330 459 aaPredicted RBP26.99■■□□□ 1.91
CLN3-207ENST00000395653 USP17L3A6NCW0 530 aa26.99■■□□□ 1.91
CLN3-207ENST00000395653 USP17L4A6NCW7 530 aa26.99■■□□□ 1.91
CLN3-207ENST00000395653 EPS15P42566 896 aa26.99■■□□□ 1.91
CLN3-207ENST00000395653 POLA2Q14181 598 aa26.99■■□□□ 1.91
CLN3-207ENST00000395653 PUM3Q15397 648 aaKnown RBP26.99■■□□□ 1.91
CLN3-207ENST00000395653 USP17L1Q7RTZ2 530 aa26.99■■□□□ 1.91
CLN3-207ENST00000395653 SSH3Q8TE77 659 aa26.99■■□□□ 1.91
CLN3-207ENST00000395653 FGFR2P21802 821 aa26.98■■□□□ 1.91
CLN3-207ENST00000395653 CEP126Q9P2H0 1117 aa26.98■■□□□ 1.91
CLN3-207ENST00000395653 IL1R1P14778 569 aa26.97■■□□□ 1.91
CLN3-207ENST00000395653 RRP1P56182 461 aaKnown RBP26.97■■□□□ 1.91
CLN3-207ENST00000395653 STRIP1Q5VSL9 837 aa26.97■■□□□ 1.91
CLN3-207ENST00000395653 RSBN1LQ6PCB5 846 aaPredicted RBP26.97■■□□□ 1.91
CLN3-207ENST00000395653 SMC1BQ8NDV3 1235 aa26.97■■□□□ 1.91
CLN3-207ENST00000395653 ZBTB40Q9NUA8 1239 aa26.97■■□□□ 1.91
CLN3-207ENST00000395653 FSTL1Q12841 308 aa26.96■■□□□ 1.91
CLN3-207ENST00000395653 CEP85Q6P2H3 762 aa26.96■■□□□ 1.91
CLN3-207ENST00000395653 AGBL3Q8NEM8 1001 aa26.96■■□□□ 1.91
CLN3-207ENST00000395653 FAM84BQ96KN1 310 aaPredicted RBP26.96■■□□□ 1.91
CLN3-207ENST00000395653 ADARB2Q9NS39 739 aaKnown RBP26.96■■□□□ 1.91
CLN3-207ENST00000395653 CNOT7Q9UIV1 285 aaKnown RBP26.96■■□□□ 1.91
CLN3-207ENST00000395653 ZNF646O15015 1829 aaPredicted RBP26.95■■□□□ 1.91
CLN3-207ENST00000395653 DACT2Q5SW24 774 aa26.95■■□□□ 1.9
CLN3-207ENST00000395653 LDHDQ86WU2 507 aa26.95■■□□□ 1.9
CLN3-207ENST00000395653 LPIN2Q92539 896 aa26.95■■□□□ 1.9
CLN3-207ENST00000395653 ADAMTSL1Q8N6G6 1762 aa26.95■■□□□ 1.9
CLN3-207ENST00000395653 IFIT1P09914 478 aaKnown RBP26.94■■□□□ 1.9
CLN3-207ENST00000395653 POTEIP0CG38 1075 aa26.94■■□□□ 1.9
CLN3-207ENST00000395653 POTEJP0CG39 1038 aa26.94■■□□□ 1.9
CLN3-207ENST00000395653 HIBADHP31937 336 aaKnown RBP26.94■■□□□ 1.9
CLN3-207ENST00000395653 GYG1P46976 350 aa26.94■■□□□ 1.9
CLN3-207ENST00000395653 EAPPQ56P03 285 aaPredicted RBP26.94■■□□□ 1.9
CLN3-207ENST00000395653 USP50Q70EL3 339 aaPredicted RBP26.94■■□□□ 1.9
CLN3-207ENST00000395653 SLC5A1P13866 664 aa26.93■■□□□ 1.9
CLN3-207ENST00000395653 CAVIN4Q5BKX8 364 aa26.93■■□□□ 1.9
CLN3-207ENST00000395653 TTLL5Q6EMB2 1281 aa26.93■■□□□ 1.9
CLN3-207ENST00000395653 MICALL2Q8IY33 904 aa26.93■■□□□ 1.9
CLN3-207ENST00000395653 MYO3BQ8WXR4 1341 aa26.93■■□□□ 1.9
CLN3-207ENST00000395653 H7C1D1 291 aa26.92■■□□□ 1.9
CLN3-207ENST00000395653 FBXO33Q7Z6M2 555 aa26.92■■□□□ 1.9
CLN3-207ENST00000395653 GMLQ99445 158 aa26.92■■□□□ 1.9
CLN3-207ENST00000395653 GTF2IP78347 998 aa26.91■■□□□ 1.9
CLN3-207ENST00000395653 G3BP1Q13283 466 aaKnown RBP eCLIP26.91■■□□□ 1.9
CLN3-207ENST00000395653 ATP2B3Q16720 1220 aa26.91■■□□□ 1.9
CLN3-207ENST00000395653 CHADLQ6NUI6 762 aa26.91■■□□□ 1.9
CLN3-207ENST00000395653 TDRD7Q8NHU6 1098 aaKnown RBP26.91■■□□□ 1.9
CLN3-207ENST00000395653 FBXW7Q969H0 707 aa26.91■■□□□ 1.9
CLN3-207ENST00000395653 VPS37DQ86XT2 251 aa26.9■■□□□ 1.9
CLN3-207ENST00000395653 RPAP2Q8IXW5 612 aaPredicted RBP26.9■■□□□ 1.9
CLN3-207ENST00000395653 SHTN1A0MZ66 631 aa26.9■■□□□ 1.9
CLN3-207ENST00000395653 SASH1O94885 1247 aa26.9■■□□□ 1.9
CLN3-207ENST00000395653 NOP58Q9Y2X3 529 aaKnown RBP26.9■■□□□ 1.9
CLN3-207ENST00000395653 TFCP2Q12800 502 aa26.89■■□□□ 1.89
CLN3-207ENST00000395653 CLEC11AQ9Y240 323 aa26.89■■□□□ 1.89
CLN3-207ENST00000395653 AKAP2Q9Y2D5 859 aa26.89■■□□□ 1.89
CLN3-207ENST00000395653 FAM205AQ6ZU69 1335 aa26.88■■□□□ 1.89
CLN3-207ENST00000395653 ZNF280AP59817 542 aaPredicted RBP26.88■■□□□ 1.89
CLN3-207ENST00000395653 MXD3Q9BW11 206 aa26.88■■□□□ 1.89
CLN3-207ENST00000395653 SURF6O75683 361 aaKnown RBP26.87■■□□□ 1.89
CLN3-207ENST00000395653 USP17L8P0C7I0 530 aa26.87■■□□□ 1.89
CLN3-207ENST00000395653 BCAMP50895 628 aa26.87■■□□□ 1.89
CLN3-207ENST00000395653 FKBP1AP62942 108 aaKnown RBP26.87■■□□□ 1.89
CLN3-207ENST00000395653 TRPM4Q8TD43 1214 aa26.87■■□□□ 1.89
CLN3-207ENST00000395653 ARAP2Q8WZ64 1704 aa26.86■■□□□ 1.89
CLN3-207ENST00000395653 MMP14P50281 582 aa26.86■■□□□ 1.89
CLN3-207ENST00000395653 SAMD7Q7Z3H4 446 aa26.86■■□□□ 1.89
CLN3-207ENST00000395653 HIRAP54198 1017 aaPredicted RBP26.85■■□□□ 1.89
CLN3-207ENST00000395653 ZC3H15Q8WU90 426 aaKnown RBP26.85■■□□□ 1.89
CLN3-207ENST00000395653 A0A1B0GUL7 405 aa26.84■■□□□ 1.89
CLN3-207ENST00000395653 HMMRO75330 724 aa26.84■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms