RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 SP8Q8IXZ3 490 aa17.3■□□□□ 0.36
HMGA1-203ENST00000374116 ANKIB1Q9P2G1 1089 aa17.3■□□□□ 0.36
HMGA1-203ENST00000374116 RAB11FIP3O75154 756 aa17.29■□□□□ 0.36
HMGA1-203ENST00000374116 CHRNDQ07001 517 aa17.29■□□□□ 0.36
HMGA1-203ENST00000374116 STAP2Q9UGK3 403 aa17.29■□□□□ 0.36
HMGA1-203ENST00000374116 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.29■□□□□ 0.36
HMGA1-203ENST00000374116 SPRYD3Q8NCJ5 442 aa17.28■□□□□ 0.36
HMGA1-203ENST00000374116 NFKBIEO00221 500 aa17.28■□□□□ 0.36
HMGA1-203ENST00000374116 CCDC93Q567U6 631 aa17.28■□□□□ 0.36
HMGA1-203ENST00000374116 MPNDQ8N594 471 aa17.28■□□□□ 0.36
HMGA1-203ENST00000374116 RIPOR2Q9Y4F9 1068 aa17.28■□□□□ 0.36
HMGA1-203ENST00000374116 DCAF8L1A6NGE4 600 aa17.27■□□□□ 0.36
HMGA1-203ENST00000374116 SURF6O75683 361 aaKnown RBP17.27■□□□□ 0.36
HMGA1-203ENST00000374116 TPM2P07951 284 aa17.27■□□□□ 0.36
HMGA1-203ENST00000374116 PRELPP51888 382 aa17.27■□□□□ 0.36
HMGA1-203ENST00000374116 DPP8Q6V1X1 898 aaPredicted RBP17.27■□□□□ 0.36
HMGA1-203ENST00000374116 ATG9AQ7Z3C6 839 aa17.27■□□□□ 0.36
HMGA1-203ENST00000374116 TMX4Q9H1E5 349 aaPredicted RBP17.27■□□□□ 0.36
HMGA1-203ENST00000374116 POLLQ9UGP5 575 aa17.27■□□□□ 0.36
HMGA1-203ENST00000374116 LRRC37AA6NMS7 1700 aa17.27■□□□□ 0.35
HMGA1-203ENST00000374116 EYA2O00167 538 aa17.26■□□□□ 0.35
HMGA1-203ENST00000374116 USP26Q9BXU7 913 aa17.26■□□□□ 0.35
HMGA1-203ENST00000374116 COPRSQ9NQ92 184 aa17.26■□□□□ 0.35
HMGA1-203ENST00000374116 ZNF277Q9NRM2 450 aaPredicted RBP17.26■□□□□ 0.35
HMGA1-203ENST00000374116 FER1L6Q2WGJ9 1857 aa17.26■□□□□ 0.35
HMGA1-203ENST00000374116 SNED1Q8TER0 1413 aa17.26■□□□□ 0.35
HMGA1-203ENST00000374116 C6orf229H3BNL8 230 aa17.26■□□□□ 0.35
HMGA1-203ENST00000374116 METTL24Q5JXM2 366 aa17.26■□□□□ 0.35
HMGA1-203ENST00000374116 AOX1Q06278 1338 aa17.25■□□□□ 0.35
HMGA1-203ENST00000374116 CCDC88AQ3V6T2 1871 aa17.25■□□□□ 0.35
HMGA1-203ENST00000374116 RIMBP2O15034 1052 aa17.25■□□□□ 0.35
HMGA1-203ENST00000374116 MX1P20591 662 aa17.25■□□□□ 0.35
HMGA1-203ENST00000374116 KLRK1P26718 216 aa17.25■□□□□ 0.35
HMGA1-203ENST00000374116 DDIT3P35638 169 aa17.25■□□□□ 0.35
HMGA1-203ENST00000374116 MRE11P49959 708 aa17.25■□□□□ 0.35
HMGA1-203ENST00000374116 CIZ1Q9ULV3 898 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-203ENST00000374116 DUOX1Q9NRD9 1551 aa17.24■□□□□ 0.35
HMGA1-203ENST00000374116 A0A1B0GUL6 1792 aa17.24■□□□□ 0.35
HMGA1-203ENST00000374116 UFL1O94874 794 aa17.24■□□□□ 0.35
HMGA1-203ENST00000374116 REC8O95072 547 aa17.24■□□□□ 0.35
HMGA1-203ENST00000374116 OS9Q13438 667 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-203ENST00000374116 RABEP1Q15276 862 aa17.24■□□□□ 0.35
HMGA1-203ENST00000374116 TMC4Q7Z404 712 aa17.24■□□□□ 0.35
HMGA1-203ENST00000374116 TAOK3Q9H2K8 898 aa17.24■□□□□ 0.35
HMGA1-203ENST00000374116 K7ELQ4 463 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-203ENST00000374116 RTKN2Q8IZC4 609 aa17.24■□□□□ 0.35
HMGA1-203ENST00000374116 TBC1D16Q8TBP0 767 aa17.24■□□□□ 0.35
HMGA1-203ENST00000374116 RHPN1Q8TCX5 695 aa17.24■□□□□ 0.35
HMGA1-203ENST00000374116 XDHP47989 1333 aa17.23■□□□□ 0.35
HMGA1-203ENST00000374116 SASH1O94885 1247 aa17.23■□□□□ 0.35
HMGA1-203ENST00000374116 TFCP2Q12800 502 aa17.23■□□□□ 0.35
HMGA1-203ENST00000374116 G3BP1Q13283 466 aaKnown RBP eCLIP17.23■□□□□ 0.35
HMGA1-203ENST00000374116 AOC3Q16853 763 aa17.23■□□□□ 0.35
HMGA1-203ENST00000374116 SOGA3Q5TF21 947 aa17.23■□□□□ 0.35
HMGA1-203ENST00000374116 TXNRD3Q86VQ6 643 aa17.23■□□□□ 0.35
HMGA1-203ENST00000374116 KIF1BPQ96EK5 621 aa17.23■□□□□ 0.35
HMGA1-203ENST00000374116 GGA1Q9UJY5 639 aa17.23■□□□□ 0.35
HMGA1-203ENST00000374116 LTBP1Q14766 1721 aa17.23■□□□□ 0.35
HMGA1-203ENST00000374116 ERC2O15083 957 aa17.22■□□□□ 0.35
HMGA1-203ENST00000374116 GRIN3BO60391 1043 aa17.22■□□□□ 0.35
HMGA1-203ENST00000374116 FKBP4Q02790 459 aaKnown RBP eCLIP17.22■□□□□ 0.35
HMGA1-203ENST00000374116 HSP90AB4PQ58FF6 505 aa17.22■□□□□ 0.35
HMGA1-203ENST00000374116 KCNJ4P48050 445 aa17.21■□□□□ 0.35
HMGA1-203ENST00000374116 CC2D2BQ6DHV5 1058 aa17.21■□□□□ 0.35
HMGA1-203ENST00000374116 VGLL2Q8N8G2 317 aa17.21■□□□□ 0.35
HMGA1-203ENST00000374116 MROH5Q6ZUA9 1318 aa17.21■□□□□ 0.35
HMGA1-203ENST00000374116 PDE8BO95263 885 aa17.21■□□□□ 0.35
HMGA1-203ENST00000374116 YY1P25490 414 aa17.21■□□□□ 0.35
HMGA1-203ENST00000374116 MCM4P33991 863 aa17.21■□□□□ 0.35
HMGA1-203ENST00000374116 PODXL2Q9NZ53 605 aa17.21■□□□□ 0.35
HMGA1-203ENST00000374116 SBF1O95248 1867 aa17.21■□□□□ 0.35
HMGA1-203ENST00000374116 COL4A5P29400 1685 aa17.2■□□□□ 0.34
HMGA1-203ENST00000374116 ZNF804BA4D1E1 1349 aa17.2■□□□□ 0.34
HMGA1-203ENST00000374116 CIAO1O76071 339 aa17.2■□□□□ 0.34
HMGA1-203ENST00000374116 IL15P40933 162 aaPredicted RBP17.2■□□□□ 0.34
HMGA1-203ENST00000374116 DOK7Q18PE1 504 aa17.2■□□□□ 0.34
HMGA1-203ENST00000374116 WASHC4Q2M389 1173 aa17.2■□□□□ 0.34
HMGA1-203ENST00000374116 PSMD1Q99460 953 aa17.2■□□□□ 0.34
HMGA1-203ENST00000374116 ANKRD2Q9GZV1 360 aa17.2■□□□□ 0.34
HMGA1-203ENST00000374116 PDCL3Q9H2J4 239 aa17.2■□□□□ 0.34
HMGA1-203ENST00000374116 IL1RAPL2Q9NP60 686 aa17.2■□□□□ 0.34
HMGA1-203ENST00000374116 CEP126Q9P2H0 1117 aa17.2■□□□□ 0.34
HMGA1-203ENST00000374116 PPIP5K2O43314 1243 aa17.19■□□□□ 0.34
HMGA1-203ENST00000374116 CD2BP2O95400 341 aaKnown RBP17.19■□□□□ 0.34
HMGA1-203ENST00000374116 TIMM10P62072 90 aa17.19■□□□□ 0.34
HMGA1-203ENST00000374116 TSHZ3Q63HK5 1081 aa17.19■□□□□ 0.34
HMGA1-203ENST00000374116 RNF181Q9P0P0 153 aa17.19■□□□□ 0.34
HMGA1-203ENST00000374116 ESPNB1AK53 854 aa17.19■□□□□ 0.34
HMGA1-203ENST00000374116 ATP2B4P23634 1241 aa17.19■□□□□ 0.34
HMGA1-203ENST00000374116 C9orf131Q5VYM1 1079 aa17.19■□□□□ 0.34
HMGA1-203ENST00000374116 RTFDC1Q9BY42 306 aaPredicted RBP17.19■□□□□ 0.34
HMGA1-203ENST00000374116 DBNDD1Q9H9R9 158 aa17.19■□□□□ 0.34
HMGA1-203ENST00000374116 IARSP41252 1262 aaKnown RBP17.18■□□□□ 0.34
HMGA1-203ENST00000374116 LARGE2Q8N3Y3 721 aa17.18■□□□□ 0.34
HMGA1-203ENST00000374116 PI4K2BQ8TCG2 481 aa17.18■□□□□ 0.34
HMGA1-203ENST00000374116 GYG1P46976 350 aa17.17■□□□□ 0.34
HMGA1-203ENST00000374116 ZC3H12CQ9C0D7 883 aaKnown RBP17.17■□□□□ 0.34
HMGA1-203ENST00000374116 KCNQ5Q9NR82 932 aa17.17■□□□□ 0.34
HMGA1-203ENST00000374116 LEMD3Q9Y2U8 911 aa17.17■□□□□ 0.34
HMGA1-203ENST00000374116 LMNB1P20700 586 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms