RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 COA4Q9NYJ1 87 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 FOXJ2Q9P0K8 574 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 FZD1Q9UP38 647 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 LIPCP11150 499 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SLC25A35Q3KQZ1 300 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SDHAF4Q5VUM1 108 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF813Q6ZN06 617 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 PTPMT1Q8WUK0 201 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 GTF3AQ92664 365 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SFRP2Q96HF1 295 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TNFRSF13CQ96RJ3 184 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 CAMTA1Q9Y6Y1 1673 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 OR2M5A3KFT3 312 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 M0R296 226 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 MGST1P10620 155 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 RPS21P63220 83 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 DHRS11Q6UWP2 260 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 Q6ZVL8 140 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SLC25A26Q70HW3 274 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 LPPQ93052 612 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM70Q9BUB7 260 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SAP30LQ9HAJ7 183 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ASCL3Q9NQ33 180 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 PLEK2Q9NYT0 353 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TRPM3Q9HCF6 1732 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TRAV27A0A087WT01 109 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 C2orf72A6NCS6 295 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 AQP7O14520 342 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 GLIPR1P48060 266 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 CLDN12P56749 244 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 RPL27P61353 136 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 VAX1Q5SQQ9 334 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 MARCH8Q5T0T0 291 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 MSRB3Q8IXL7 192 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ZFP62Q8NB50 900 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 OR4A16Q8NH70 328 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 GCDHQ92947 438 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 NAA60Q9H7X0 242 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 GNB3P16520 340 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 AKR1C3P42330 323 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF100Q8IYN0 542 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TBX15Q96SF7 602 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SMG9Q9H0W8 520 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 GPR84Q9NQS5 396 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SCN11AQ9UI33 1791 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 DSPPQ9NZW4 1301 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 A0A1W2PN81 502 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TAL1P17542 331 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 CHRNA7P36544 502 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 CLDN15P56746 228 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SEMG2Q02383 582 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 HLA-DRB5Q30154 266 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ADAMTSL4Q6UY14 1074 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 PNKDQ8N490 385 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 GJC3Q8NFK1 279 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 UBE2FQ969M7 185 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SPSB1Q96BD6 273 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 NUDT22Q9BRQ3 303 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 GKN1Q9NS71 199 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 KLF2Q9Y5W3 355 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 WTIPA6NIX2 430 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 DHRS7CA6NNS2 312 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 DNASE2O00115 360 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ISLRO14498 428 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 NUTF2P61970 127 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SLC25A34Q6PIV7 304 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SYT9Q86SS6 491 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 NKAIN4Q8IVV8 208 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 APH1AQ96BI3 265 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TM4SF18Q96CE8 201 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 CCDC74BQ96LY2 380 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 FBXO4Q9UKT5 387 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 MTCH2Q9Y6C9 303 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 POU3F2P20265 443 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 PLP1P60201 277 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SRSF4Q08170 494 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TESK1Q15569 626 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 THNSL2Q86YJ6 484 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 IGSF8Q969P0 613 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ZG16BQ96DA0 208 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TAAR6Q96RI8 345 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SIGLEC11Q96RL6 698 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 OR5V1Q9UGF6 321 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ZFP30Q9Y2G7 519 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 RCL1Q9Y2P8 373 aaKnown RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 A0A0D9SEW6 157 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 KIR2DS5A0A0G2JLQ3 304 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 A0A0G2JNG1 304 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 KIR2DS3K7RE56 304 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 KCNQ2O43526 872 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 MUC1P15941 1255 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TM4SF1P30408 202 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ZXDBP98169 803 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF117Q03924 483 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 KIR2DS5Q14953 304 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 SLC36A2Q495M3 483 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 PRSS45Q7RTY3 260 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TMPRSS9Q7Z410 1059 aa4.22□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM251Q8N6I4 163 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms