RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 EFNB1P98172 346 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 ZNF181Q2M3W8 571 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 C10orf67Q8IYJ2 551 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 C1orf87Q8N0U7 546 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 MUC20Q8N307 709 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-228ENST00000618469 CBR4Q8N4T8 237 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 OR8B12Q8NGG6 310 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 OR51G2Q8NGK0 314 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 OR11L1Q8NGX0 322 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 FAM81AQ8TBF8 368 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 OR8B4Q96RC9 309 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 PAPOLGQ9BWT3 736 aaKnown RBP13.43□□□□□ -0.26
BRCA1-228ENST00000618469 MROQ9BYG7 248 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 RGCCQ9H4X1 137 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 USE1Q9NZ43 259 aa13.43□□□□□ -0.26
BRCA1-228ENST00000618469 A6NLC8 198 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 PNPP00491 289 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 SRP14P37108 136 aaKnown RBP13.42□□□□□ -0.26
BRCA1-228ENST00000618469 PMELP40967 661 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 GSK3AP49840 483 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 ALDH3A2P51648 485 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 CXCR4P61073 352 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 LCN2P80188 198 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 MPPED2Q15777 294 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 ZNF829Q3KNS6 432 aaPredicted RBP13.42□□□□□ -0.26
BRCA1-228ENST00000618469 FAM201AQ5SY85 155 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 LRRC28Q86X40 367 aaPredicted RBP13.42□□□□□ -0.26
BRCA1-228ENST00000618469 OR8J1Q8NGP2 316 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 OR8S1Q8NH09 359 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 Q8TCH9 128 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 ASB17Q8WXJ9 295 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 ERGIC1Q969X5 290 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 FN3KRPQ9HA64 309 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 S100A14Q9HCY8 104 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 IMPAD1Q9NX62 359 aa13.42□□□□□ -0.26
BRCA1-228ENST00000618469 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.42□□□□□ -0.26
BRCA1-228ENST00000618469 A0A0G2JMP0 313 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 A0A0X1KG70 313 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 TMEM269A0A1B0GVZ9 245 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 CEACAM18A8MTB9 384 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 ZNF670-ZNF695F2Z2N8 137 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 PHYHO14832 338 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 SPRY1O43609 319 aaPredicted RBP13.41□□□□□ -0.26
BRCA1-228ENST00000618469 APOL3O95236 402 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 RPS2P15880 293 aaKnown RBP13.41□□□□□ -0.26
BRCA1-228ENST00000618469 GNALP38405 381 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 RIDAP52758 137 aaKnown RBP13.41□□□□□ -0.26
BRCA1-228ENST00000618469 SEC61A1P61619 476 aaKnown RBP13.41□□□□□ -0.26
BRCA1-228ENST00000618469 ROM1Q03395 351 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 OR8B8Q15620 311 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 ZIK1Q3SY52 487 aaPredicted RBP13.41□□□□□ -0.26
BRCA1-228ENST00000618469 FAHD2BQ6P2I3 314 aaPredicted RBP13.41□□□□□ -0.26
BRCA1-228ENST00000618469 DEGS2Q6QHC5 323 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 ZNF322Q6U7Q0 402 aaPredicted RBP13.41□□□□□ -0.26
BRCA1-228ENST00000618469 COMMD2Q86X83 199 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 KLBQ86Z14 1044 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 ZNF679Q8IYX0 411 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 PQLC1Q8N2U9 271 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 FTMTQ8N4E7 242 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 CSNK2A3Q8NEV1 391 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 OR4M2Q8NGB6 313 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 FAHD2AQ96GK7 314 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 LYZL4Q96KX0 146 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 TBX5Q99593 518 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 PATZ1Q9HBE1 687 aaKnown RBP13.41□□□□□ -0.26
BRCA1-228ENST00000618469 G6PC2Q9NQR9 355 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 CLN6Q9NWW5 311 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 FAM206AQ9NX38 181 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 WARS2Q9UGM6 360 aaKnown RBP13.41□□□□□ -0.26
BRCA1-228ENST00000618469 GTF2A1LQ9UNN4 478 aa13.41□□□□□ -0.26
BRCA1-228ENST00000618469 PPIAL4EA0A075B759 164 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 hCG_1807616A0A1W2PRN6 198 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 F5H0A9 414 aaPredicted RBP13.4□□□□□ -0.26
BRCA1-228ENST00000618469 PPIAL4DF5H284 164 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 ZNF254O75437 659 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 FOXH1O75593 365 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 PTBP3O95758 552 aaKnown RBP13.4□□□□□ -0.26
BRCA1-228ENST00000618469 GRPP07492 148 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 PPIAL4FP0DN26 164 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 ACKR3P25106 362 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 HTR1FP30939 366 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 HOXA4Q00056 320 aaPredicted RBP13.4□□□□□ -0.26
BRCA1-228ENST00000618469 MFGE8Q08431 387 aaPredicted RBP13.4□□□□□ -0.26
BRCA1-228ENST00000618469 MZT1Q08AG7 82 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 DCAF12L2Q5VW00 463 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 PLEKHG7Q6ZR37 379 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 BOLLQ8N9W6 283 aaKnown RBP13.4□□□□□ -0.26
BRCA1-228ENST00000618469 SPERTQ8NA61 448 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 C19orf18Q8NEA5 215 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 STMN2Q93045 179 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 MNTQ99583 582 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 C9orf16Q9BUW7 83 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 C14orf119Q9NWQ9 140 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 C1orf123Q9NWV4 160 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 HAO2Q9NYQ3 351 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 ZNF391Q9UJN7 358 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 RHBDD3Q9Y3P4 386 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 PPIAL4AQ9Y536 164 aa13.4□□□□□ -0.26
BRCA1-228ENST00000618469 MAGEB4O15481 346 aaPredicted RBP13.39□□□□□ -0.27
BRCA1-228ENST00000618469 ZFP36P26651 326 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms