RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TMEM88Q6PEY1 159 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 ZFP62Q8NB50 900 aaPredicted RBP13.78□□□□□ -0.2
CIITA-204ENST00000570546 ZNF485Q8NCK3 441 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 BORCS7Q96B45 105 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 VN1R1Q9GZP7 353 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 C5orf49A4QMS7 147 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 ARL3P36405 182 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 OR2W3Q7Z3T1 314 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 INTS12Q96CB8 462 aaKnown RBP13.78□□□□□ -0.2
CIITA-204ENST00000570546 SPACA9Q96E40 222 aaPredicted RBP13.78□□□□□ -0.2
CIITA-204ENST00000570546 UQCC2Q9BRT2 126 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 SCGB1D1O95968 90 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 HLA-HP01893 362 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 CELA2BP08218 269 aaPredicted RBP13.77□□□□□ -0.2
CIITA-204ENST00000570546 DHRS2Q13268 280 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 RTN4IP1Q8WWV3 396 aaPredicted RBP13.77□□□□□ -0.2
CIITA-204ENST00000570546 RAB39BQ96DA2 213 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 CMBLQ96DG6 245 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 SUCNR1Q9BXA5 334 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 LANCL2Q9NS86 450 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 SPINT2O43291 252 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 SPRY1O43609 319 aaPredicted RBP13.77□□□□□ -0.2
CIITA-204ENST00000570546 FPR2P25090 351 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 RRADP55042 308 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 MPPED2Q15777 294 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 SSX2Q16385 188 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 TMEM178AQ8NBL3 297 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 FN3KRPQ9HA64 309 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 MRPS18AQ9NVS2 196 aaKnown RBP13.77□□□□□ -0.2
CIITA-204ENST00000570546 ARID2Q68CP9 1835 aa13.77□□□□□ -0.2
CIITA-204ENST00000570546 MDFIC2A0A1B0GVS7 189 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 PPP1R2P9O14990 202 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 CBLN3Q6UW01 205 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 OR1L3Q8NH93 324 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 NARFLQ9H6Q4 476 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 ST3GAL6Q9Y274 331 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 B4GALT1P15291 398 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 UQCC3Q6UW78 93 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 OSR2Q8N2R0 312 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 ZNF768Q9H5H4 540 aaKnown RBP13.77□□□□□ -0.21
CIITA-204ENST00000570546 PPP1R3CQ9UQK1 317 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 LSM2Q9Y333 95 aaKnown RBP13.77□□□□□ -0.21
CIITA-204ENST00000570546 NFYBP25208 207 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 CD96P40200 585 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 DUSP2Q05923 314 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 PPP1R1AQ13522 171 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 TMEM91Q6ZNR0 172 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 ADGRG3Q86Y34 549 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 C1orf87Q8N0U7 546 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 OR4D9Q8NGE8 314 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 GABRG3Q99928 467 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 C12orf10Q9HB07 376 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 FAM60AQ9NP50 221 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 MYO9BQ13459 2157 aa13.77□□□□□ -0.21
CIITA-204ENST00000570546 A0A096LPE4 126 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 A0A1W2PPZ6 126 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 ALG1L2C9J202 215 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 CLRN3Q8NCR9 226 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 NPEPL1Q8NDH3 523 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 OR11L1Q8NGX0 322 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 ZFC3H1O60293 1989 aaKnown RBP13.76□□□□□ -0.21
CIITA-204ENST00000570546 TRIM77I1YAP6 450 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 EFSO43281 561 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 ARR3P36575 388 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 SMAD4Q13485 552 aaKnown RBP13.76□□□□□ -0.21
CIITA-204ENST00000570546 C9orf62Q8N4C0 152 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 NANPQ8TBE9 248 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 PP6455Q8WZ26 134 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 OR8U8P0C7N1 319 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 PSG6Q00889 435 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 TMEM92Q6UXU6 159 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 RDH5Q92781 318 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 LIN37Q96GY3 246 aaPredicted RBP13.76□□□□□ -0.21
CIITA-204ENST00000570546 ARV1Q9H2C2 271 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 PLPP3O14495 311 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 MT-ND4LP03901 98 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 CD37P11049 281 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 HLA-DOBP13765 273 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 PWWP2BQ6NUJ5 590 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 H2BFWTQ7Z2G1 175 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 CATSPERDQ86XM0 798 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 CDC20BQ86Y33 519 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 RHOFQ9HBH0 211 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 GPR160Q9UJ42 338 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 PRELID3BQ9Y3B1 194 aa13.76□□□□□ -0.21
CIITA-204ENST00000570546 EDDM3AQ14507 147 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 C1orf53Q5VUE5 145 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 ZNF687Q8N1G0 1237 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 OR5AP2Q8NGF4 316 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 UBE2ZQ9H832 354 aaPredicted RBP13.75□□□□□ -0.21
CIITA-204ENST00000570546 GNG13Q9P2W3 67 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 NDRG3Q9UGV2 375 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 GAB2Q9UQC2 676 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 RCL1Q9Y2P8 373 aaKnown RBP13.75□□□□□ -0.21
CIITA-204ENST00000570546 C9orf170A2RU37 121 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 HIST1H1DP16402 221 aaKnown RBP13.75□□□□□ -0.21
CIITA-204ENST00000570546 CXCL3P19876 107 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 SNCAP37840 140 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 SLC25A26Q70HW3 274 aa13.75□□□□□ -0.21
CIITA-204ENST00000570546 BPIFCQ8NFQ6 507 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms