RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 LRATO95237 230 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 FARS2O95363 451 aaKnown RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 GJB5O95377 273 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 SYNGR4O95473 234 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 NFATC1O95644 943 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 CER1O95813 267 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 NDUFB10O96000 172 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 THY1P04216 161 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RLN1P04808 185 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2BJP06899 126 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 CD14P08571 375 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ALPIP09923 528 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 OR5G3P0C626 314 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 SFTA3P0C7M3 94 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 UROSP10746 265 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ACP2P11117 423 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 LAMP1P11279 417 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 PSG1P11464 419 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 FGF5P12034 268 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 NCK1P16333 377 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2BOP23527 126 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 CYP2F1P24903 491 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 EPHA2P29317 976 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 MIPP30301 263 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2BBP33778 126 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 FASLGP48023 281 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 MTNR1AP48039 350 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RFX3P48380 749 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 AKR1C2P52895 323 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 CDH12P55289 794 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 CTBP2P56545 445 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 FOXL2P58012 376 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 OR4D2P58180 307 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2BDP58876 126 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 TPI1P60174 286 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2BCP62807 126 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RPL32P62910 135 aaKnown RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 EFNB1P98172 346 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 B4GALNT1Q00973 533 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 PAX5Q02548 391 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 PAX2Q02962 417 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 BAXQ07812 192 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RBBP4Q09028 425 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ST3GAL3Q11203 375 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HYAL1Q12794 435 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ITPK1Q13572 414 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RBM39Q14498 530 aaKnown RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 EBPQ15125 230 aaKnown RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 TEAD2Q15562 447 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 NTRK2Q16620 822 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 PRSS8Q16651 343 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HIST2H2BEQ16778 126 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 SNAI3Q3KNW1 292 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 IFI44LQ53G44 452 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 COA6Q5JTJ3 125 aaKnown RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 RAET1LQ5VY80 246 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 LIPMQ5VYY2 423 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ZNF57Q68EA5 555 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 TMEM42Q69YG0 159 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 C22orf42Q6IC83 251 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ADAM5Q6NVV9 412 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 PRSS54Q6PEW0 395 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 CNIH2Q6PI25 160 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 DOK6Q6PKX4 331 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 B3GLCTQ6Y288 498 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ZNF705AQ6ZN79 300 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 Q6ZPB1 254 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 GLT6D1Q7Z4J2 308 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 DEFB128Q7Z7B8 93 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 OR6V1Q8N148 313 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 BATF2Q8N1L9 274 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 GBGT1Q8N5D6 347 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 SLC35G3Q8N808 338 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 Q8N9P0 234 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 ZSCAN4Q8NAM6 433 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 SIDT2Q8NBJ9 832 aaKnown RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 OR52L1Q8NGH7 329 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 OR51G2Q8NGK0 314 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 OR9I1Q8NGQ6 314 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 OR13C4Q8NGS5 318 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 OR51F2Q8NH61 342 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HMGCLL1Q8TB92 370 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ZNF564Q8TBZ8 553 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 SLC7A13Q8TCU3 470 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 NUDCD2Q8WVJ2 157 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 FAM151AQ8WW52 585 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 SORCS1Q8WY21 1168 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 NPIPB3Q92617 1050 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2BHQ93079 126 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 POP5Q969H6 163 aaKnown RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 MCHR2Q969V1 340 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 SLC25A28Q96A46 364 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 MRAP2Q96G30 205 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 C16orf58Q96GQ5 468 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 PYURFQ96I23 114 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 IL17FQ96PD4 163 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 TSSK3Q96PN8 268 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ARHGDIGQ99819 225 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2BNQ99877 126 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms