RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 TIGD6Q17RP2 521 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 TP53I3Q53FA7 332 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 ZNF322Q6U7Q0 402 aaPredicted RBP11.7□□□□□ -0.54
CLN3-235ENST00000568497 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.7□□□□□ -0.54
CLN3-235ENST00000568497 OR5L1Q8NGL2 311 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 CNIH3Q8TBE1 160 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 SPRYD4Q8WW59 207 aaPredicted RBP11.7□□□□□ -0.54
CLN3-235ENST00000568497 RDH5Q92781 318 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 OR2V2Q96R30 315 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 OR8B4Q96RC9 309 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 PRRG3Q9BZD7 231 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 YIPF3Q9GZM5 350 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 UFSP2Q9NUQ7 469 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 SLC22A13Q9Y226 551 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 IGHV1-69-2A0A0G2JMI3 117 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 IQCF6A8MYZ5 107 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 CYB5R3P00387 301 aaPredicted RBP11.69□□□□□ -0.54
CLN3-235ENST00000568497 ERCC1P07992 297 aaPredicted RBP11.69□□□□□ -0.54
CLN3-235ENST00000568497 GNAO1P09471 354 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 TACSTD2P09758 323 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 ACKR3P25106 362 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 DVL1P1P54792 670 aaPredicted RBP11.69□□□□□ -0.54
CLN3-235ENST00000568497 FAM3AP98173 230 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 MALLQ13021 153 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 MPPED2Q15777 294 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 MOGAT3Q86VF5 341 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 GLCCI1Q86VQ1 547 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 GID4Q8IVV7 300 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 ZNF454Q8N9F8 522 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 BOLLQ8N9W6 283 aaKnown RBP11.69□□□□□ -0.54
CLN3-235ENST00000568497 OR8G5Q8NG78 346 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 OR8J1Q8NGP2 316 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 MEGF10Q96KG7 1140 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 SLC30A2Q9BRI3 323 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 FGF23Q9GZV9 251 aaPredicted RBP11.69□□□□□ -0.54
CLN3-235ENST00000568497 FAM206AQ9NX38 181 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 GPR160Q9UJ42 338 aa11.69□□□□□ -0.54
CLN3-235ENST00000568497 SLC22A31A6NKX4 558 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 ZNF670-ZNF695F2Z2N8 137 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 SLC15A1P46059 708 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 GPR6P46095 362 aaPredicted RBP11.68□□□□□ -0.54
CLN3-235ENST00000568497 GSK3AP49840 483 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 PSMA6P60900 246 aaKnown RBP11.68□□□□□ -0.54
CLN3-235ENST00000568497 IL5RAQ01344 420 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 ZNF91Q05481 1191 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 POU4F2Q12837 409 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 MAB21L1Q13394 359 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 UNQ6126/PRO20091Q6UXV3 157 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 ZNF826PQ6ZT77 177 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 USP43Q70EL4 1123 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 CLDND2Q8NHS1 167 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 LGALS12Q96DT0 336 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 FAM71F1Q96KD3 344 aaPredicted RBP11.68□□□□□ -0.54
CLN3-235ENST00000568497 TMEM100Q9NV29 134 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 SMPD3Q9NY59 655 aaPredicted RBP11.68□□□□□ -0.54
CLN3-235ENST00000568497 ENOPH1Q9UHY7 261 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 MYRFQ9Y2G1 1151 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 RHBDD3Q9Y3P4 386 aa11.68□□□□□ -0.54
CLN3-235ENST00000568497 hCG_38984A0A1B0GV85 526 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 TMEM269A0A1B0GVZ9 245 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 ISPDA4D126 451 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 P2RY10O00398 339 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 SRSF10O75494 262 aaKnown RBP11.67□□□□□ -0.54
CLN3-235ENST00000568497 WBP4O75554 376 aaKnown RBP11.67□□□□□ -0.54
CLN3-235ENST00000568497 ALX3O95076 343 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 MT-ND5P03915 603 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 EPHA1P21709 976 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 GIFP27352 417 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 ATP6V1E1P36543 226 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 GMFBP60983 142 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 OGFRL1Q5TC84 451 aaPredicted RBP11.67□□□□□ -0.54
CLN3-235ENST00000568497 WDR86Q86TI4 376 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 COMMD2Q86X83 199 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 RDH10Q8IZV5 341 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 YIPF7Q8N8F6 280 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 OR51E1Q8TCB6 317 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 SIGLEC11Q96RL6 698 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 ADAT1Q9BUB4 502 aaKnown RBP11.67□□□□□ -0.54
CLN3-235ENST00000568497 PBOV1Q9GZY1 135 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 OR10A2Q9H208 303 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 ACOXLQ9NUZ1 547 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 CLN6Q9NWW5 311 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 UBAP1Q9NZ09 502 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 WARS2Q9UGM6 360 aaKnown RBP11.67□□□□□ -0.54
CLN3-235ENST00000568497 WIPI2Q9Y4P8 454 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 TANC2Q9HCD6 1990 aa11.67□□□□□ -0.54
CLN3-235ENST00000568497 NBEAL2Q6ZNJ1 2754 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 H3BSA7 217 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 TFF1P04155 84 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 GRPP07492 148 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 ACHEP22303 614 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 ZFP36P26651 326 aaKnown RBP11.66□□□□□ -0.54
CLN3-235ENST00000568497 CRYBB2P43320 205 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 MMP16P51512 607 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 RIDAP52758 137 aaKnown RBP11.66□□□□□ -0.54
CLN3-235ENST00000568497 SNRPGP62308 76 aaKnown RBP11.66□□□□□ -0.54
CLN3-235ENST00000568497 FOXL1Q12952 345 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 OR8G1Q15617 311 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 MOGQ16653 247 aa11.66□□□□□ -0.54
CLN3-235ENST00000568497 PCGF3Q3KNV8 242 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms