RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 DNAJC27Q9NZQ0 273 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 ERVK-18Q9QC07 812 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 TRAV38-1A0A0B4J264 116 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 PRR23D1E9PI22 279 aaPredicted RBP18.72■□□□□ 0.59
CLN3-215ENST00000565236 C3orf80F5H4A9 247 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 DYNC1I1O14576 645 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 GYG2O15488 501 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 HMGN1P05114 100 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 H2BFMP0C1H6 154 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 PRR23D2P0DMB1 279 aaPredicted RBP18.72■□□□□ 0.59
CLN3-215ENST00000565236 IGHV4-38-2P0DP08 117 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 PRTN3P24158 256 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 MTNR1AP48039 350 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 NPY4RP50391 375 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 FAM3AP98173 230 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 PLBD1Q6P4A8 553 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 ZNF826PQ6ZT77 177 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 TRPM8Q7Z2W7 1104 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 SPATA24Q86W54 205 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.72■□□□□ 0.59
CLN3-215ENST00000565236 TIGD4Q8IY51 512 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 ZMYND19Q96E35 227 aaPredicted RBP18.72■□□□□ 0.59
CLN3-215ENST00000565236 TECTBQ96PL2 329 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 DUX5Q96PT3 197 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 YY1AP1Q9H869 796 aa18.72■□□□□ 0.59
CLN3-215ENST00000565236 hCG_1807616A0A1W2PRN6 198 aa18.71■□□□□ 0.59
CLN3-215ENST00000565236 NDUFA2O43678 99 aa18.71■□□□□ 0.59
CLN3-215ENST00000565236 OSMP13725 252 aa18.71■□□□□ 0.59
CLN3-215ENST00000565236 CFL1P23528 166 aaKnown RBP18.71■□□□□ 0.59
CLN3-215ENST00000565236 OPRL1P41146 370 aa18.71■□□□□ 0.59
CLN3-215ENST00000565236 ZNF121P58317 390 aaPredicted RBP18.71■□□□□ 0.59
CLN3-215ENST00000565236 FLOT2Q14254 428 aa18.71■□□□□ 0.59
CLN3-215ENST00000565236 DNAL1Q4LDG9 190 aa18.71■□□□□ 0.59
CLN3-215ENST00000565236 CD276Q5ZPR3 534 aa18.71■□□□□ 0.59
CLN3-215ENST00000565236 ZNF48Q96MX3 618 aaPredicted RBP18.71■□□□□ 0.59
CLN3-215ENST00000565236 AMELYQ99218 206 aa18.71■□□□□ 0.59
CLN3-215ENST00000565236 OR10A2Q9H208 303 aa18.71■□□□□ 0.59
CLN3-215ENST00000565236 ZMAT3Q9HA38 289 aaKnown RBP18.71■□□□□ 0.59
CLN3-215ENST00000565236 BRD7Q9NPI1 651 aa18.71■□□□□ 0.59
CLN3-215ENST00000565236 OOEPA6NGQ2 149 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 DNAJC9-AS1A6NH13 148 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 ADAM20O43506 726 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 ENSAO43768 121 aaKnown RBP18.7■□□□□ 0.58
CLN3-215ENST00000565236 PRKACGP22612 351 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 GFOD2Q3B7J2 385 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 KLHL12Q53G59 568 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 PRSS45Q7RTY3 260 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 HS3ST5Q8IZT8 346 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 ZNF454Q8N9F8 522 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 THEM6Q8WUY1 208 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 PGAM5Q96HS1 289 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 TEX12Q9BXU0 123 aa18.7■□□□□ 0.58
CLN3-215ENST00000565236 TRAV40A0A0B4J280 105 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 PLATP00750 562 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 LYNP07948 512 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 ANXA8P13928 327 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 GSK3AP49840 483 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 FGF12P61328 243 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 CBX1P83916 185 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 CDK5Q00535 292 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 AWAT1Q58HT5 328 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 C9orf139Q6ZV77 190 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 CPOQ8IVL8 374 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 OTOSQ8NHW6 89 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 BCAS4Q8TDM0 211 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 CTSZQ9UBR2 303 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 DNAJB9Q9UBS3 223 aa18.69■□□□□ 0.58
CLN3-215ENST00000565236 C22orf46C9J442 243 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 TNFRSF13BO14836 293 aaPredicted RBP18.68■□□□□ 0.58
CLN3-215ENST00000565236 PRODHO43272 600 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 SELENOFO60613 162 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 LHBP01229 141 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 GYPAP02724 150 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 LIPFP07098 398 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 HKR1P10072 659 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 GNALP38405 381 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 FOXL1Q12952 345 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 GCSAMQ8N6F7 178 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 CSNK2A3Q8NEV1 391 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 SLC25A28Q96A46 364 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 RGCCQ9H4X1 137 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 ZNF319Q9P2F9 582 aa18.68■□□□□ 0.58
CLN3-215ENST00000565236 hCG_38984A0A1B0GV85 526 aa18.67■□□□□ 0.58
CLN3-215ENST00000565236 FKBP6O75344 327 aa18.67■□□□□ 0.58
CLN3-215ENST00000565236 RPS7P62081 194 aaKnown RBP18.67■□□□□ 0.58
CLN3-215ENST00000565236 SNCBQ16143 134 aa18.67■□□□□ 0.58
CLN3-215ENST00000565236 FTMTQ8N4E7 242 aa18.67■□□□□ 0.58
CLN3-215ENST00000565236 C1orf147Q96MC9 270 aaPredicted RBP18.67■□□□□ 0.58
CLN3-215ENST00000565236 PAPOLGQ9BWT3 736 aaKnown RBP18.67■□□□□ 0.58
CLN3-215ENST00000565236 RASSF4Q9H2L5 321 aa18.67■□□□□ 0.58
CLN3-215ENST00000565236 RNPEPL1Q9HAU8 725 aa18.67■□□□□ 0.58
CLN3-215ENST00000565236 KIF17Q9P2E2 1029 aa18.67■□□□□ 0.58
CLN3-215ENST00000565236 POMPQ9Y244 141 aa18.67■□□□□ 0.58
CLN3-215ENST00000565236 RHBDD3Q9Y3P4 386 aa18.67■□□□□ 0.58
CLN3-215ENST00000565236 SOX21Q9Y651 276 aaPredicted RBP18.67■□□□□ 0.58
CLN3-215ENST00000565236 TCRBV3S1A0A5B6 114 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 TIPRLO75663 272 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 NAA10P41227 235 aaPredicted RBP18.66■□□□□ 0.58
CLN3-215ENST00000565236 POU4F2Q12837 409 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 SLC35D3Q5M8T2 416 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms